Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1534 ATGGAGCTTGTAGCTTCACACATTTCTTCAACTCTTCCCAGAAATAAATTTCTGCCTCACACCCTATTTTCTGGATTCATCACTCCAATTCCTTTCCATCAAATTCCACTTCAATTTTCGTCCCAATTTGTTTGTTGTATACATAGGAACCGTCGCTTTCAAGTTTTTGCACTTAAAAAGGAGAACCTATGGGTTAGCGAACAAGTGTATAGCACAGAATCAGAAGGAGTAGAGGAACCCGATACGAGTTCATCTTTGGAGGATGACTTGTCTTTCTTGTCTCTCAGCGAGAAACCAGATAGGAATATGGCCTTGCTCGACGATTATGAAGCGGAGGAGTTTGATTATGATTCTCAAACTGATCACCGAAGCGAGCTTGTGCCTGATGATGCAATTCTTAATTTGAATGAGTCAAATGCAGGGTATGTGGCTTTACTTGGCATGCCAAATGTTGGGAAGAGTACACTCGCAAACCAAATGATTGGCCAAAAGTTGTCAATAGTTACACAGAAACCTCAAACAACAAGGCATCGAATTCTTGGTATATGTTCTGGCTCAGATTATCAGATAGTACTTTATGATACACCTGGTGTTCTCAAGAAGGAAATGCACATGTTGGACTcaatgatgatgaagaatgtTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTAGTTCTTGTTGATGCAAGTAAAGTTCCTGAAAAAATTGATGAAGTGTTGGAAGAAGGTGTAGGAAACCTCAAAGATAAGCCTCCCACTCTATTGATTCTGAATAAGAAGGATCTTATCAAACCTGGTGAAATTGCAAAGAAACTTGAGTGGTATCAGAAATTCACTGATGTTGATGAGGTCATTCCAGTAAGTGCCAAATATGGTCATGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCACATGGACCAGCTTATTATCCAAAGGACATTGTCAGTGAGCACCCTGAAAGATTTTTTGTTGGTGAAATTGTTAGAGAAAAGATCTTTATGCAGTATAGAAATGAAATTCCTTATGCATGTCAGGTGAATGTTGTAAGCTACAAGGCTCGGCCCAATGCAAAAGATTTCATACAAGTGGAGATTGTTGTTGAGAAAAACTCGCAGAAGATTATACTTATTGGAAGAGAAGGAAAggctttgaaacttcttgcaacaGCTGCCCGTCTTGACATAGAAGATTTTCTGCAGAAGAAAGTTTATCTTGAGATTGAAGTAAAGGTGAAAGAAAATTGGCGGCAAGACGAAGGTCTTCTCAAGTACTATGGCTATGGGGGTCAGATACGAGCTCTATAA 1317 0.3865 MELVASHISSTLPRNKFLPHTLFSGFITPIPFHQIPLQFSSQFVCCIHRNRRFQVFALKKENLWVSEQVYSTESEGVEEPDTSSSLEDDLSFLSLSEKPDRNMALLDDYEAEEFDYDSQTDHRSELVPDDAILNLNESNAGYVALLGMPNVGKSTLANQMIGQKLSIVTQKPQTTRHRILGICSGSDYQIVLYDTPGVLKKEMHMLDSMMMKNVRSAAVNADCVLVLVDASKVPEKIDEVLEEGVGNLKDKPPTLLILNKKDLIKPGEIAKKLEWYQKFTDVDEVIPVSAKYGHGVEDVKDWILSKLPHGPAYYPKDIVSEHPERFFVGEIVREKIFMQYRNEIPYACQVNVVSYKARPNAKDFIQVEIVVEKNSQKIILIGREGKALKLLATAARLDIEDFLQKKVYLEIEVKVKENWRQDEGLLKYYGYGGQIRAL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1534 438 Pfam KH domain 343 420 IPR004044 GO:0003723
Sto11g1534 438 PANTHER GTPASE ERA 82 432 IPR005662 GO:0003723|GO:0005525
Sto11g1534 438 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 316 431 IPR009019 GO:0003723
Sto11g1534 438 Gene3D - 321 435 IPR015946 -
Sto11g1534 438 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 139 309 IPR030388 GO:0005525
Sto11g1534 438 Gene3D - 135 320 IPR027417 -
Sto11g1534 438 Hamap GTPase Era [era]. 138 431 IPR005662 GO:0003723|GO:0005525
Sto11g1534 438 Pfam 50S ribosome-binding GTPase 143 260 IPR006073 GO:0005525
Sto11g1534 438 ProSiteProfiles Type-2 KH domain profile. 340 417 IPR004044 GO:0003723
Sto11g1534 438 CDD Era 140 307 IPR030388 GO:0005525
Sto11g1534 438 TIGRFAM small_GTP: small GTP-binding protein domain 143 302 IPR005225 GO:0005525
Sto11g1534 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 341 IPR027417 -
Sto11g1534 438 PANTHER GTPASE ERA-LIKE, CHLOROPLASTIC 82 432 - -
Sto11g1534 438 TIGRFAM era: GTP-binding protein Era 141 414 IPR005662 GO:0003723|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1534 Sto-Chr11 14531070 14535264 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1534 K03595 - gmx:100815820 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1534 11 14531070 14535264 Sto11g1534 11 14531070 14535264 ECH