Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1488 atgtTTGCAGGGACACAAcctgagagagaagagaaagtgtCTTTGGAGCTGAGTGAAGAGCTTCTTCAGAGTATGGAAGTAGGAATGGCCTTTAAGGACTATAATGGTAAAATTAGTTCAATGGATTTTCACCGGGCATCAAGTTATCTAGTGACGGCTAGTGATGACGAATCCATTCGCCTTTATGATGTCACCAGTGGAACATCTTTAAAGACAATTAATAGCAAGAAGTATGGGGTTGATCTGGTTTGCTTCACATCTCATCCCACAACAGTCATCTACTCATCAAAAAATGGTTGGGATGAATCTTTGCGGCTTCTGTCATTGCATGATAACAAGTACTTGAGATATTTCAAAGGTCACCATGACAGGGTTGTCTCTCTTAGCTTATGCTCTCGCAAAGACTGCTTTATATCTGGTTCTCTTGATCGAACTGTTTTACTGTGGGACCAAAGGGCTGAGAAGTGCCAGGGACTTTTGCGAGTACAAGGAAGGCCTGCTGTATCATATGATGATCAAGGGCTAGTATTTGCTATTGCTTTTGGAGGACTTATAAGAATGTTTGATGCTCGCAAGTATGAAAAGGGTCCCTTTGAAATATTTTCTGTTGGGGGAGATATTTCTGATGCAAATGTTGTCAAGTTCAGTAATGATGGGAGACTTATGCTTTTAACTACTGCTGACGGGCATATTCATGTTCTTGATTCATTTCGCGGCACACTTCTATCCACATATAATGTTGCTCCAGTCTCATGCAATTCCACATTAGAAGCTTCCTTCAGCCCTGAGGGAATGTTTGTAATATCAGGTTCAGGGAATGGCAGCGTCTATGCATGGAgtgttcgaagtgggaaagaaGTTGCAAGTTGGATTAGTGCCACTTCTGATACCGGACCTCCGGTTATAAAATGGGCTCCTGGAAGTCTTATGTTTGCAACTGGATCTTCTGAGCTCTCATTTTGGGTTCCAGATTTGTCTAAGTTGGGAGCTTACGTGGGAAGAAAATAG 1008 0.4018 MFAGTQPEREEKVSLELSEELLQSMEVGMAFKDYNGKISSMDFHRASSYLVTASDDESIRLYDVTSGTSLKTINSKKYGVDLVCFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGHHDRVVSLSLCSRKDCFISGSLDRTVLLWDQRAEKCQGLLRVQGRPAVSYDDQGLVFAIAFGGLIRMFDARKYEKGPFEIFSVGGDISDANVVKFSNDGRLMLLTTADGHIHVLDSFRGTLLSTYNVAPVSCNSTLEASFSPEGMFVISGSGNGSVYAWSVRSGKEVASWISATSDTGPPVIKWAPGSLMFATGSSELSFWVPDLSKLGAYVGRK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1488 335 PRINTS G protein beta WD-40 repeat signature 50 64 IPR020472 -
Sto11g1488 335 PRINTS G protein beta WD-40 repeat signature 137 151 IPR020472 -
Sto11g1488 335 PRINTS G protein beta WD-40 repeat signature 267 281 IPR020472 -
Sto11g1488 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 150 IPR001680 GO:0005515
Sto11g1488 335 SUPERFAMILY WD40 repeat-like 36 323 IPR036322 GO:0005515
Sto11g1488 335 Pfam WD domain, G-beta repeat 114 150 IPR001680 GO:0005515
Sto11g1488 335 Pfam WD domain, G-beta repeat 37 63 IPR001680 GO:0005515
Sto11g1488 335 Gene3D - 14 325 IPR015943 GO:0005515
Sto11g1488 335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 150 - -
Sto11g1488 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 289 IPR001680 GO:0005515
Sto11g1488 335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 31 67 - -
Sto11g1488 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 31 72 IPR001680 GO:0005515
Sto11g1488 335 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 4 334 - -
Sto11g1488 335 PANTHER WD40 REPEAT PROTEIN SWD2 4 334 IPR037867 GO:0048188
Sto11g1488 335 SMART WD40_4 196 235 IPR001680 GO:0005515
Sto11g1488 335 SMART WD40_4 24 63 IPR001680 GO:0005515
Sto11g1488 335 SMART WD40_4 238 280 IPR001680 GO:0005515
Sto11g1488 335 SMART WD40_4 111 150 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1488 Sto-Chr11 14147729 14151305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1488 31 333 Miscellaneous Gene Families AT5G08390 21.498 2.36e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1488 K14962 - gmx:100807825 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1488 11 14147729 14151305 Sto11g1488 11 14147729 14151305 ECH