Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1412 ATGTTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTGGGCTCAAAGAGACAAAGAATGATGGAATCCGATCCATACTTCGCAGTGAGCAGCGGTGCAGGCACCTTTCAACCTTATGGATACAGTGGTGGCTTCCAGCCTCAGCCTTTTCCTGTGGTTCGTCTGAGGGGGCTTCCATTCAACTGCACTGATATTGACATTTTTAAGTTCTTTGCTGGTCTTGACATTGTGGATGTGTTGCTGGTCAACAAAAGTGGACGGTTTTCTGGAGAGGCCTTTGTGGTCTTTGCGGGAGCAATGCAGGTTGAGTTTGCTCTGCAGAGAGATCGACAGAACATGGGTCGAAGATACGTGGAAGTTTTTAGGTGTAAGAGGCAAGATTATTACAATGCCGTTGCTGCTGAGGTAAATTACGAAGGAATATATGACAATGACTACCATGGAAGCCCTCCTCCTTCCCGGTCCAAGAGGTCCAGTGACAAGGATCAAATGGAATACACTGAGATATTGAAAATGCGTGGTCTTCCATATACTGTGAAGGAGTCTGAAATTGTTGAATTTTTTGGAGATTTTAAGATTGTTGAAGATAGGATACATATTGCACGCCGCCCGGATGGAAAAGCTACAGGAGAAGCTTATGTGGAATTTGTTTCAGCGGAGGAGGCTAAGAGAGCAATGTGCAAGGATAAGATGACAATTGGATCAAGGTACGTGGAGCTGTTTCCTTCTACAACAGATGAAGCTAGAAGGGCAGAGTCAAGGTCAAGGCAGTGA 774 0.4638 MLGSGGVSDGYEVGSKRQRMMESDPYFAVSSGAGTFQPYGYSGGFQPQPFPVVRLRGLPFNCTDIDIFKFFAGLDIVDVLLVNKSGRFSGEAFVVFAGAMQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVAAEVNYEGIYDNDYHGSPPPSRSKRSSDKDQMEYTEILKMRGLPYTVKESEIVEFFGDFKIVEDRIHIARRPDGKATGEAYVEFVSAEEAKRAMCKDKMTIGSRYVELFPSTTDEARRAESRSRQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1412 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 245 IPR000504 GO:0003723
Sto11g1412 257 SMART rrm1_1 169 241 IPR000504 GO:0003723
Sto11g1412 257 SMART rrm1_1 52 121 IPR000504 GO:0003723
Sto11g1412 257 Gene3D - 49 134 IPR012677 -
Sto11g1412 257 SUPERFAMILY RNA-binding domain, RBD 167 254 IPR035979 GO:0003676
Sto11g1412 257 Gene3D - 148 257 IPR012677 -
Sto11g1412 257 SUPERFAMILY RNA-binding domain, RBD 41 130 IPR035979 GO:0003676
Sto11g1412 257 CDD RRM_hnRNPH_ESRPs_RBM12_like 52 121 - -
Sto11g1412 257 CDD RRM_hnRNPH_ESRPs_RBM12_like 169 241 - -
Sto11g1412 257 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED 3 257 - -
Sto11g1412 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 116 IPR000504 GO:0003723
Sto11g1412 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 238 IPR000504 GO:0003723
Sto11g1412 257 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 3 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1412 Sto-Chr11 13520094 13520867 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1412 K12898 - qsu:112005513 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1412 11 13520094 13520867 Sto11g1412 11 13520094 13520867 ECH