Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1356 ATGGAAATGGTTGCTCCCGTCTCGCTGAAACCTGCACCCATACTTCCTCCTCAGACACACTTGAATCTCAACTATGATCAAACCAAAATCCATTCTACACTTTCTCCTTCTCACAATCTCTCCCTTCTCCTACCTCCCAAACCTCAAAATCTTCCTCTCCATCCCATCTCCACCATTTCATCACAGCCCCTTAATCCCCAAATCACTACTTACAGTACCTTCCATTATTGCAGGAACAAGCACAAGACCGCAAAAGGGTACGCCCCTAAACCTACTACAACCTCTGATATCCTTCGCTTGATGGATGGTCTCGCCTTCTCCATACCCATCGACATCTACACTATTCTCATAGAAGAGTGTACTGTTTCTGGGGATCCTAATACAGCCATGGAGTTGTTCACTCATATCACCCAAAGTGGTATTATTAAGCCTCCCTTGACTCTGCTTAATCGGCTCCTTGTAATGTTCGTGTCATGCGGTTTGGTGGAGCATGCCCACCACCTGTTTGATAAAATGTCTGTGAGGGACTTCAACTCATGGGCAACCTTAATTGTTGCTTATTTCAATGATTCTAATTATGAGGAAGCCATAGGATTGTTTCTCGGTATGATTCACCAGGTGGGTATGTTGGAATTGCCTAAATGGGTCCTGCTCTGCCTTCTCAAGGCATGTGGCTGCACTATGAACTTGGGCCTGGGGAAGCAAATTCATGGATGGTTATTCAAGTTCAACATGTGTGATGATGTGCTTATAACTAGCTCATTGATTCAATTCTATGGGAAATTCAAGTGTGTGGAAGATGCAAACCTGGTCTTTAAACTAGTGTCACGCCACAACACCTTCACTTGGACAGCTAAAATAGTGAATGATTGTAGGAAAATGCATTTCTCTGATGTTCTTAGTGACTTCAAGGAGATGGGAAGGCAAGGAATAAGGAAGAACAGTTTCACACTTTCTAGTGTGCTCAAGGCATGTGGAAGAATGCTAAGTCATGGACACTGTGGGCAACAGGTACATGCTAATGCCATTAAGCTTGGATTGGTATCAGATAGTTATGTGGAATGTGGTTTGATAGACATGTATGGAAGAAGTGGGTTAGTAAGAGAAGCGAAAATGGTGTTTGAGATGATCAGAGATAGAACAAATATTGCTTGCTGGAATGCAATGCTTATGGGATACATACAAAATGGGTTGTACATTGAGGCTATTAAGTTTTTGTATCAGATGAATGCAGCTGGAGTGCAACCCCAAGAGTCTCTGCTCAATGAGGTTCATTCGAGATTTGCTCTTAGGTGGCTGAACCGTCGGGGGCCATCCGACTCAAGTCGAGCTGAACCAGTGGTCATCAAAAAGAGAAGACCCCAAGTACAATCTCTGCCTGCATTCATCTTCAATTCCTTCGACACTATCATCAACACCTTCATAGACCCACCAATTAAACCTTCCGTCGACCCCAAACACGTCCTCTCCAACAATTTCGCTCCCGTCGATGAGCTTCCTCCCACAGAATGCGAAATCATCCATGGCTCTCTCCCTCCTTCCCTCGACGGCGCCTACATTCGAAACGGCCCAAACCCACAATTTCTCCCTCGTGGACCTTACCATCTCTTCGACGGCGATGGAATGCTTCACTGCCTTCGCATCTCTCAAGGAAAACCCACTCTCTCGAGTAGATACGTCAAGACTTATAAATACACCATTGAAAACGAAGCAGGGTATGCCATAATCCCCAATGTCTTCTCCGGCTTCAATGGCCTCGTAGCTTCTGCGGCACGTGGGTCTGTGACTGCCGCACGTGTCCTCGCAGGTCAGTACAACCCCGCTAATGGCATTGGCTTGGCTAATACTAGCTTGGCTCTGTTTGGGAATCGTCTTTTCGCTTTAGGAGAGTCCGATCTTCCTTATGAAATCAAATTGACGCCAAATGGTGATGTTCAGACTCTGGGTCGTCACGATTTTGAGGGTAAGCTTTTCATGAGCATGACGGCTCACCCCAAGGTCGACGCTGACACCGGCGAGACCTTCGCTTTCCGGTACGGCCCTGTTCCGCCGTTTCTCACCTACTTCCGATTCGATTCCAACGGAGTGAAACAAACCGACGTCCCCGTTTTCTCCATGACCCGACCCTCTTTTCTTCACGACTTCGCGATCACCAAGAACTACGCCGTTTTCGCCGACATCCAAATCGGAATGAACCCCGTGGAGATGCTTGCGGGGGGATCTCCGGTGGGTTCGGACCCATCGAAGGTTTCGAGAATCGGCGTTCTTCCAAGCATAGTGTTAATAGCTCCGAACATTCTGTCAGTGGAGCACACGCTAGAGAGAATGGAGTTAGTACACGCGATGGTGGAGAAAGTGAAGATCGATCTCAAAACAGGGATAGTGAGGAGACAACCAATTTCAGCGAGGAATCTGGATTTCGCGAAGGGAGAGTCGAAGTTTCTGGTGATGGACGCGAAGTCGCCGGAGCTTGAGGTGGTGGCGGAGGTGAGGTTGCCGCGGCGTGTGCCGTACGGTTTTCATGGGTTGTTTGTGAGGGAAAGTGACATCATGAAGCTTTCTTGA 2565 0.4745 MEMVAPVSLKPAPILPPQTHLNLNYDQTKIHSTLSPSHNLSLLLPPKPQNLPLHPISTISSQPLNPQITTYSTFHYCRNKHKTAKGYAPKPTTTSDILRLMDGLAFSIPIDIYTILIEECTVSGDPNTAMELFTHITQSGIIKPPLTLLNRLLVMFVSCGLVEHAHHLFDKMSVRDFNSWATLIVAYFNDSNYEEAIGLFLGMIHQVGMLELPKWVLLCLLKACGCTMNLGLGKQIHGWLFKFNMCDDVLITSSLIQFYGKFKCVEDANLVFKLVSRHNTFTWTAKIVNDCRKMHFSDVLSDFKEMGRQGIRKNSFTLSSVLKACGRMLSHGHCGQQVHANAIKLGLVSDSYVECGLIDMYGRSGLVREAKMVFEMIRDRTNIACWNAMLMGYIQNGLYIEAIKFLYQMNAAGVQPQESLLNEVHSRFALRWLNRRGPSDSSRAEPVVIKKRRPQVQSLPAFIFNSFDTIINTFIDPPIKPSVDPKHVLSNNFAPVDELPPTECEIIHGSLPPSLDGAYIRNGPNPQFLPRGPYHLFDGDGMLHCLRISQGKPTLSSRYVKTYKYTIENEAGYAIIPNVFSGFNGLVASAARGSVTAARVLAGQYNPANGIGLANTSLALFGNRLFALGESDLPYEIKLTPNGDVQTLGRHDFEGKLFMSMTAHPKVDADTGETFAFRYGPVPPFLTYFRFDSNGVKQTDVPVFSMTRPSFLHDFAITKNYAVFADIQIGMNPVEMLAGGSPVGSDPSKVSRIGVLPSIVLIAPNILSVEHTLERMELVHAMVEKVKIDLKTGIVRRQPISARNLDFAKGESKFLVMDAKSPELEVVAEVRLPRRVPYGFHGLFVRESDIMKLS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1356 854 TIGRFAM PPR: pentatricopeptide repeat domain 385 416 IPR002885 -
Sto11g1356 854 PANTHER BETA-CAROTENE DIOXYGENASE 447 757 IPR004294 GO:0016702
Sto11g1356 854 PANTHER BETA-CAROTENE DIOXYGENASE 758 808 IPR004294 GO:0016702
Sto11g1356 854 PANTHER BETA-CAROTENE DIOXYGENASE 809 851 IPR004294 GO:0016702
Sto11g1356 854 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 758 808 - -
Sto11g1356 854 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 447 757 - -
Sto11g1356 854 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 809 851 - -
Sto11g1356 854 Pfam PPR repeat 112 141 IPR002885 -
Sto11g1356 854 Pfam PPR repeat 179 204 IPR002885 -
Sto11g1356 854 Pfam PPR repeat 357 379 IPR002885 -
Sto11g1356 854 Pfam PPR repeat 150 175 IPR002885 -
Sto11g1356 854 Pfam PPR repeat 385 414 IPR002885 -
Sto11g1356 854 Gene3D Tetratricopeptide repeat domain 337 430 IPR011990 GO:0005515
Sto11g1356 854 Gene3D Tetratricopeptide repeat domain 210 336 IPR011990 GO:0005515
Sto11g1356 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Sto11g1356 854 Gene3D Tetratricopeptide repeat domain 59 209 IPR011990 GO:0005515
Sto11g1356 854 Pfam Retinal pigment epithelial membrane protein 808 845 IPR004294 GO:0016702
Sto11g1356 854 Pfam Retinal pigment epithelial membrane protein 495 757 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1356 Sto-Chr11 13112605 13127386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1356 183 429 Glycoside Hydrolase AT3G49170 26.667 1.13e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1356 K09840 - tcc:18606899 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1356 11 13112605 13127386 Sto11g1356 11 13112605 13127386 ECH