Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1352 ATGATTGAAGTCCAAACTGGGTTCGATTCCACCACTCTATTGCTTATGGTGTCTGCTTCACTATATATGAATAAGTTTGAGCATGCACGGGCAATTCATTGTTTGAGTATTAAAGCTGGGATGCTTGTAGATATTAGTTTAGGTAATGCTCTTATTAACATGTATGCAAAATGTGGTGCTTTAAGCTCCTCTGAGTTTCTCTTTTCAGAGAGAAGGTATAAAGATGTCATTTCATGGAATTCAGTAATGAGAGCAAGTCTTTACAACGGGGATCCAAAGAAATCACTGCATTACTTCAAGGATTTGCTTCTTTCTGGAGAAATAGCAGACAGCATCAGTCTGTCTTGTGCTATATCGGCATCCTCTGCTTTAGGAGAGTTTGATCTCGGTCAGTCAATGCATGCACTTGGAATCAAGCTGTGTTACCTGGATAACTTGCATGTTTCAGTTTTCAACTCTCTCATTTCATGCTATTTACAATGTGGAGACATCGAAGCTGCTGAAACTGTATTCAGAGAAATGGTATGCAAAGATATTGTTTCGTTGAATGCTATGATGGAAGGATATGCCTCAAATGGGAAGATTAATGAAGTATTTGATCTTCTCTTTGAAATGCAGATGGCAGATTCTCTCCAACCTGATACAGTAACATTGACAACAATACTAACACTTTGTGCAGAAATGATGCTCTCTAGAGAAGGGAGAACTGTCCATGGATTTTCACTTCGAAGACTGATGTTGGCAGATATTATGCTGCTAAACAGCCTGATAGATATGTATTCAAAATGCAAGCTTGTAGAGAAAGCCCATCACTTGTTTCAGTCTGCCAAAGAGAGAGACTTGGTCTCTTGGAATGCAATGATATCTGGGTATTCACTAAACGGGTACTCTAAAGAAGCCCAAAGTTTGTTCAGGGAGCTTCTCCATTGGTTCCCTAACTGCAGTTTGTCAACTGTTTTTGCTGTTCTTTCATCCTGCAATTCCATTGATAGTCTCCCTTTTGGAAAATCAGTTCACTGCTGGCAATTAAAATCAGGATTTCTGAACGATATTCTCTTAGTTAATTCCCTCATACTCATGTATATCAATTGCAGAGACCTAACAACCGCTTTCTCAGTTTTTCAAGAGAACTCTGCTTTAGCAGATACGGCTTCATGGAACACTCTAATTGTGGGCTGTGTAAAGGGCGACCATTTTCATGAGGCTCTGGAAACTTTTAGTTTAATGAGACAAAGACCCTCTGTCAACTATGATTCCATTACTCTTGTAAGTGTCTTGTCAGCATGTGCATACCTTGAGCTACTCAACAGAGGAAAATATCTCCATGGGCTTCTCCTTAAATCTCCTATGGGATCAGAAACTCGGATTCAGAATTCATTAATTACCATGTATGGAAGATGCAGGGACATAAAAAGTGCCAGATCAGTGTTCGAATTCTGTAATATTCTTAATCTGTGCACGTGGAATTGCATGATCTCAGCTTTGTCTCACAACAAAGAAAGTAGAGTAGCATTGGAACTATTTCATCATCTTCAGTTCGAACCAAATGAGATAACTATTGTCAGTGTTCTCTCTGCTTGTACTCAACTTGGAGTATTAAGACATGGAAGACAAGTTCATGCCCGAGTATTCAGGTCCAATTTTCATGATAATACTTTCATATCTGGGGCTCTTGTTGATATGTATAGCAATGGTGGAAGATTGGACCTTGCTCTCCAAGTATTTACACATTCAAAGGAGAAGTCTGAAGCTTCTTGGAACTCAATGATTTCTGCATATGGATATCATGGAAAAGGTAAGAAAGCAATGGAACTGTTTCATGAAATGTGCAAGTCCAGAACCAGGGTGACCAAAAGCACTTTTGTTAGCCTTTTATCTGCTTGCAGCCATTCGGGACTTGTTAATGAAGGTCTTGGATACTACAATTGTATGTTGGAGAAATATGAAATACAACCGGAGACTGAGCATCAAGTTTATGTGGTTGACATGCTAGGTCGATCTGGTAGACTCAATGAGGCGTATGAGTTCATTAAGGACTTGCACTCCAATTCTAGTTCTGGTTTGTGGGGAACCCTCCTAAGTGCTTGCAATTACCATGGAGAACTCAAGTTGGGGAGACAAATTGCTGAACTTCTGTTCGAAACGGACCCTCGAAATGTCGGATATTACATTTCATTGTCGAATATGTATGTTGCTGTAGGAAGCTGGAAAGATGCCACAGAGTTGAGGCAGACAATCCAGGAGCAGGGATTAAGGAAAACCATGGGTTATAGTCTTATTGAAGTTGGTTTGGGATAA 2298 0.3982 MIEVQTGFDSTTLLLMVSASLYMNKFEHARAIHCLSIKAGMLVDISLGNALINMYAKCGALSSSEFLFSERRYKDVISWNSVMRASLYNGDPKKSLHYFKDLLLSGEIADSISLSCAISASSALGEFDLGQSMHALGIKLCYLDNLHVSVFNSLISCYLQCGDIEAAETVFREMVCKDIVSLNAMMEGYASNGKINEVFDLLFEMQMADSLQPDTVTLTTILTLCAEMMLSREGRTVHGFSLRRLMLADIMLLNSLIDMYSKCKLVEKAHHLFQSAKERDLVSWNAMISGYSLNGYSKEAQSLFRELLHWFPNCSLSTVFAVLSSCNSIDSLPFGKSVHCWQLKSGFLNDILLVNSLILMYINCRDLTTAFSVFQENSALADTASWNTLIVGCVKGDHFHEALETFSLMRQRPSVNYDSITLVSVLSACAYLELLNRGKYLHGLLLKSPMGSETRIQNSLITMYGRCRDIKSARSVFEFCNILNLCTWNCMISALSHNKESRVALELFHHLQFEPNEITIVSVLSACTQLGVLRHGRQVHARVFRSNFHDNTFISGALVDMYSNGGRLDLALQVFTHSKEKSEASWNSMISAYGYHGKGKKAMELFHEMCKSRTRVTKSTFVSLLSACSHSGLVNEGLGYYNCMLEKYEIQPETEHQVYVVDMLGRSGRLNEAYEFIKDLHSNSSSGLWGTLLSACNYHGELKLGRQIAELLFETDPRNVGYYISLSNMYVAVGSWKDATELRQTIQEQGLRKTMGYSLIEVGLG 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1352 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 310 IPR002885 -
Sto11g1352 765 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 207 531 - -
Sto11g1352 765 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 318 763 - -
Sto11g1352 765 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 6 307 - -
Sto11g1352 765 Pfam E motif 699 761 IPR046848 -
Sto11g1352 765 Gene3D Tetratricopeptide repeat domain 557 759 IPR011990 GO:0005515
Sto11g1352 765 Gene3D Tetratricopeptide repeat domain 1 137 IPR011990 GO:0005515
Sto11g1352 765 Gene3D Tetratricopeptide repeat domain 230 332 IPR011990 GO:0005515
Sto11g1352 765 Gene3D Tetratricopeptide repeat domain 335 436 IPR011990 GO:0005515
Sto11g1352 765 Gene3D Tetratricopeptide repeat domain 140 229 IPR011990 GO:0005515
Sto11g1352 765 Gene3D Tetratricopeptide repeat domain 437 543 IPR011990 GO:0005515
Sto11g1352 765 Pfam PPR repeat family 583 629 IPR002885 -
Sto11g1352 765 Pfam PPR repeat family 177 225 IPR002885 -
Sto11g1352 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Sto11g1352 765 TIGRFAM PPR: pentatricopeptide repeat domain 150 180 IPR002885 -
Sto11g1352 765 TIGRFAM PPR: pentatricopeptide repeat domain 180 214 IPR002885 -
Sto11g1352 765 TIGRFAM PPR: pentatricopeptide repeat domain 486 512 IPR002885 -
Sto11g1352 765 TIGRFAM PPR: pentatricopeptide repeat domain 385 412 IPR002885 -
Sto11g1352 765 TIGRFAM PPR: pentatricopeptide repeat domain 254 282 IPR002885 -
Sto11g1352 765 TIGRFAM PPR: pentatricopeptide repeat domain 585 613 IPR002885 -
Sto11g1352 765 Pfam PPR repeat 385 412 IPR002885 -
Sto11g1352 765 Pfam PPR repeat 487 510 IPR002885 -
Sto11g1352 765 Pfam PPR repeat 282 308 IPR002885 -
Sto11g1352 765 Pfam PPR repeat 458 478 IPR002885 -
Sto11g1352 765 Pfam PPR repeat 77 106 IPR002885 -
Sto11g1352 765 Pfam PPR repeat 254 280 IPR002885 -
Sto11g1352 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 412 IPR002885 -
Sto11g1352 765 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1352 Sto-Chr11 13056534 13058831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1352 110 763 Glycoside Hydrolase AT3G49170 31.343 5.81e-100 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1352 - - gmx:100775736 1108.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1352 11 13056534 13058831 Sto11g1352 11 13056534 13058831 ECH