Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1339 ATGCATTATTCAGTGGATTTGAGAAGGCTTTCGATCACTATATCTTCTCCTTTCCTATCACCCATCGCTCGCTCCTTGACCTCAGTGACACCTACAGCCCAACGCCACTATCTTCAAGACCATGACCCTCCTCAACCGCCGTTTTCACAGACCCAGAATCAACTACTATCTTTTGATCAGGGTCTGCTTAATTTGGTACCTTCTATTCTCTCTAGTAGGGTTCTAGATTCTTCTAAATGTAAAGCATTGATACCCCAGTTGACCCCTCATGAATTTGATGAATTGTTTTTTACTATTCACTCCAATATAAACCTCAAAACTACTCTCCATTTCTTTCATTTCGCTGCTGGTTCTTTGAAGTTTCCATTTACAGTTCGGTCGTACTGCCTTTTGGTTTGTTTGCTTCTGGGTTCGAATTTTTTGTCACCTGCCAGATTGATTTTGAGTCGTTTGATTGATGGAAACCTGCCCGCTCTGTTTGGTAACCATGATAATAGGCGCATTGAAATAGCCAATTCAATGTTGGAGCTCAATACTGTTACAGCTAGGTCATACGATGGATTGGATTTGTTGATTCATGTTTTTTGCACCCAATTCGAGAATGGACTTGATTCTGCTATTGATATCTTTTACTTATTGGCCAGAAATGGCACATTACCTTCTCAAAAAACTTGCAATTTGTTGTTGAGCTCTTTATTGAAGGCTAACGAACTTCAGAAGTGTTACAAATTGTTTGAAGTTTTTAGTCAAGGTGTTGTACCAGACGTTTACACATGTACTACTGCAATCAATGCATATTTTAAAGGAGGGAGGACAGAGGATGCAATTGGTTTGTTCTCGAAAATGGAGGAAATTGGTAGCTCACCTAATGTCATTACATACAATAACATGATTGATGGGCTCTGCAAGAGTGGAAGATTAGAAGAAGCATTTCAATTTAAAGCAAGGATGGTAAAAAGCAAAGTGAATCCAAGTCTTATAACATATAGTGTGCTTATCAATGCTCTAGTGAAGGTGGGGAAATTTGATGAAGCAAATAGCATTTTGTTAGAAATGTCCAACATGGGGTTTACTGCAAATGAGATTATTTATAACACAATGATTGAAGGATACTGCAGGAAGGGAAATATGAGTGAAGCACTGAGGATCAATAATGACATGTTATCTAAGGGCATAAAACCCAATTTTGTTACTTTGAATACTCTTTTAAAAGGTTTATGCAGGAGTAATCAAATGGAGCAAGCTGAGAAAATGTTAGAGGAGATATTATTGAGTGGCTTATCCATTAACCATAATGCCTGTTTTTCTATTATTCATTGGTTATGTAAAATATCAAGGTTTGAGTCTGCCCTACGACTTGTTAGAGAGTTATTGTTGAGGAACATCAAGCCTAGTGATAGCTTGCTTACCCCATTAGTCCGAGGACTTTGTAAGTGTAAAAAACATTCAGAGGCAATTGTACTTTGGTTTAGCCTTGCAGATAAAGGCTTTGCAGTCAATACAACTACCTCAAACACTCTTCTCCAAGGACTTTGTGAACAAGGTAACATGCAGGAGGTTGTCACTGTACTTAAAAAGATGCTTGAGAGGGGGTTGGTCATGGATAGGATCTCATACAACATCGTCATTTTTTACTGTTGCAAAGGTGGAAGAGTCAAAGAAGGTTTAAAGCTTAAGGAAGAAATGGAAAAGCAAGGACTCCAACCAGATATAGGAACCTACAATTGCATAATGGAGAGGTTGGTTGATATGGGTAAAATGGATGATGCTAAAATTCTTTTGCATGAAGGCAAACAAAATTTCGTGGTTCCAAATGTCTATACATATGCATTGATCATAAGAGGATATTGTAAGTCTGACAGAATTGAAGAGGGTGTAAACTTATTCAACGAGTTGGTTAATAAGAAAGTAAAGCTAAGTTCTGCTGTTTATAACATACTTATAGGAGCATATTGCAGAATTGGAAACATGATAGAAGCCTTCAAACTTCGTGATGCCATGAAAAGTAAGGGTATTCAACCAACATGTGCCACATATTCTTCTCTAATACATGGTTTGTGCAATATTGGCCGTGTTGATGAGGCAAAAGATATTTTCgaagaaatgagaaaagaagGCTTGTTCCCAGATGTTGTATGTTATACTGCACTAATTGGTGGTTACTGTAAGCTAGGCCAGTTGGATAGAGTGGGGAGTGTCTTGCAGGAAATGTCTTCCAACAATATACAACCTAATGAAATTACCTATACTGTTTTGATTGATGGGTATTGCAAGTTGGGCAATATTAAAGAAGCAAATAAACTTTTAGGTGAGATGATAGCAAATGGAGTGACACCAGATACCATCACTTATAATGCATTGCTAAATGGGCATTGCAAGGAAAGGAATCTACAAGAAGCTTTTCAGCTGTGTGATCATATGTCTAGTGGAGGGGTATCAATAGACGAAATTACATACACTACACTGGTTCATGGGTTTACACTAACAGTCAAGAGAGCTTTTGTCATATCATCACAAGTCCTTGCTTGGACAACAGATTTAGAATGA 2547 0.3757 MHYSVDLRRLSITISSPFLSPIARSLTSVTPTAQRHYLQDHDPPQPPFSQTQNQLLSFDQGLLNLVPSILSSRVLDSSKCKALIPQLTPHEFDELFFTIHSNINLKTTLHFFHFAAGSLKFPFTVRSYCLLVCLLLGSNFLSPARLILSRLIDGNLPALFGNHDNRRIEIANSMLELNTVTARSYDGLDLLIHVFCTQFENGLDSAIDIFYLLARNGTLPSQKTCNLLLSSLLKANELQKCYKLFEVFSQGVVPDVYTCTTAINAYFKGGRTEDAIGLFSKMEEIGSSPNVITYNNMIDGLCKSGRLEEAFQFKARMVKSKVNPSLITYSVLINALVKVGKFDEANSILLEMSNMGFTANEIIYNTMIEGYCRKGNMSEALRINNDMLSKGIKPNFVTLNTLLKGLCRSNQMEQAEKMLEEILLSGLSINHNACFSIIHWLCKISRFESALRLVRELLLRNIKPSDSLLTPLVRGLCKCKKHSEAIVLWFSLADKGFAVNTTTSNTLLQGLCEQGNMQEVVTVLKKMLERGLVMDRISYNIVIFYCCKGGRVKEGLKLKEEMEKQGLQPDIGTYNCIMERLVDMGKMDDAKILLHEGKQNFVVPNVYTYALIIRGYCKSDRIEEGVNLFNELVNKKVKLSSAVYNILIGAYCRIGNMIEAFKLRDAMKSKGIQPTCATYSSLIHGLCNIGRVDEAKDIFEEMRKEGLFPDVVCYTALIGGYCKLGQLDRVGSVLQEMSSNNIQPNEITYTVLIDGYCKLGNIKEANKLLGEMIANGVTPDTITYNALLNGHCKERNLQEAFQLCDHMSSGGVSIDEITYTTLVHGFTLTVKRAFVISSQVLAWTTDLE 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 535 569 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 324 IPR002885 -
Sto11g1339 848 SUPERFAMILY TPR-like 223 453 IPR011990 GO:0005515
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 710 744 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 570 604 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 607 640 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 257 290 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 782 816 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 678 711 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 747 781 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 712 746 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 436 465 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 643 676 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 397 430 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 537 571 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 505 535 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 292 325 IPR002885 -
Sto11g1339 848 TIGRFAM PPR: pentatricopeptide repeat domain 363 395 IPR002885 -
Sto11g1339 848 Gene3D Tetratricopeptide repeat domain 737 837 IPR011990 GO:0005515
Sto11g1339 848 Gene3D Tetratricopeptide repeat domain 668 736 IPR011990 GO:0005515
Sto11g1339 848 Gene3D Tetratricopeptide repeat domain 599 667 IPR011990 GO:0005515
Sto11g1339 848 Gene3D Tetratricopeptide repeat domain 459 528 IPR011990 GO:0005515
Sto11g1339 848 Gene3D Tetratricopeptide repeat domain 529 598 IPR011990 GO:0005515
Sto11g1339 848 Gene3D Tetratricopeptide repeat domain 387 458 IPR011990 GO:0005515
Sto11g1339 848 Gene3D Tetratricopeptide repeat domain 313 386 IPR011990 GO:0005515
Sto11g1339 848 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 821 - -
Sto11g1339 848 Gene3D Tetratricopeptide repeat domain 104 312 IPR011990 GO:0005515
Sto11g1339 848 Pfam PPR repeat 503 532 IPR002885 -
Sto11g1339 848 Pfam PPR repeat 602 631 IPR002885 -
Sto11g1339 848 Pfam PPR repeat 251 283 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 745 779 IPR002885 -
Sto11g1339 848 Pfam PPR repeat family 536 578 IPR002885 -
Sto11g1339 848 Pfam PPR repeat family 779 826 IPR002885 -
Sto11g1339 848 Pfam PPR repeat family 289 338 IPR002885 -
Sto11g1339 848 Pfam PPR repeat family 360 408 IPR002885 -
Sto11g1339 848 Pfam PPR repeat family 641 688 IPR002885 -
Sto11g1339 848 Pfam PPR repeat family 709 758 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Sto11g1339 848 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 13 821 - -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 674 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Sto11g1339 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 605 639 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1339 Sto-Chr11 12952445 12956206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1339 466 828 Glycosyltransferase AT1G05670 32.782 2.57e-60 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1339 - - jre:108991576 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1339 11 12952445 12956206 Sto11g1339 11 12952445 12956206 ECH