Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1299 ATGACAACTGTTAAAGTCAGTAATGTTTCCTTGGGAGCAACAGAGCGAGACATAAAGgagttcttctctttttctggTGACATTGTATATGTTGAAATGCAGAGCCATGATGAACGGTCCCAAATTGCCTATGTCACCTTCAAGGATTTGCAAGGAGCTGAGACTGCAGTACTACTATCGGGAGCAACAATAGTTGATCTGTCAGTTACAGTAACTCTGGATCCAGACTACAAGCTTCCACCTGCTGCACTTGCATCATCTACAACAGCCAACCAGACTCCTGCTGGTGCCGAATCTGCTTTACGGAAGGCCGAGGACGTGGTCACCAGCATGCTAGCCAAAGGCTTCATCTTAGGGAAAGATGCTGTCAACAAAGCAAAAACTTTTGATGAGAGGCACCAGCTATCTTCGACAGCCTCAGCAAAAGTTGCAtcttttgaccaaaaaattGGGCTTAGTGAGAAAATAAGTGTCGGCGCTACAGTTGTGAGTGATAGAGTTCGAGAAGTGGATCAAAAGTATCAGGTTTCAGAGAAAACCAAATCGGCATTCGCAGCCGCGGAGCAGAAAGTCAGTACTGCCGGTTCTGCTATAATGAAGAACCGTTATGTACTTACCGGGGCTTCCTGGGTAACAGGTGCTTTTAACAAGGTGGCTAAGGCAGCCAGCGAAGTGGGACAAAAGACAAAAGAGAAAGTGGAGAATGCTGAAGAGGAAGAGAAGCGAAAAGTAGAGGATCAGTATGCACAGGTTCTATCAGAGTCTCCAAAAGCAGCAGGAACAACAAGTGAGCAGCACCCTCCTTCTAAGCCTCCTCCTGCTCAGGGTTTGATCCTTTAA 840 0.4476 MTTVKVSNVSLGATERDIKEFFSFSGDIVYVEMQSHDERSQIAYVTFKDLQGAETAVLLSGATIVDLSVTVTLDPDYKLPPAALASSTTANQTPAGAESALRKAEDVVTSMLAKGFILGKDAVNKAKTFDERHQLSSTASAKVASFDQKIGLSEKISVGATVVSDRVREVDQKYQVSEKTKSAFAAAEQKVSTAGSAIMKNRYVLTGASWVTGAFNKVAKAASEVGQKTKEKVENAEEEEKRKVEDQYAQVLSESPKAAGTTSEQHPPSKPPPAQGLIL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1299 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 76 IPR000504 GO:0003723
Sto11g1299 279 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 2 261 - -
Sto11g1299 279 MobiDBLite consensus disorder prediction 225 279 - -
Sto11g1299 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 64 IPR000504 GO:0003723
Sto11g1299 279 Gene3D - 1 72 IPR012677 -
Sto11g1299 279 SMART rrm1_1 3 72 IPR000504 GO:0003723
Sto11g1299 279 MobiDBLite consensus disorder prediction 225 248 - -
Sto11g1299 279 SUPERFAMILY RNA-binding domain, RBD 2 75 IPR035979 GO:0003676
Sto11g1299 279 Coils Coil 219 254 - -
Sto11g1299 279 PANTHER BINDING PARTNER OF ACD11 1 2 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1299 Sto-Chr11 12659626 12662322 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1299 - - gmx:100809613 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1299 11 12659626 12662322 Sto11g1299 11 12659626 12662322 ECH