Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1226 ATGAAAATTGTGAATCTACTTCCGCCGCGTTCTCCCATTTCCGACGACGCCGTTTCCATAATGCAAAACCTCACTTCCAGTGGTGATCACGATCATCCCATTCAAACCCACTCCAACGTACCAACATTCAAGCGCACTAGTAACCGTGCGAAACGACCCGTATTCAAAGTTCTACCGGGGCAGATCGGCTTCCGCCTTCTTTGCCATGCCTCCATCGTCGGCGGTTTGATCGGCAACGCCGGCGCTATAGTATCTCAGCTACGGCGACAAACTGCCTGTATAATCCATTGTATAGATCCTATATCCTTTACGGACGATAGGGTCATTCTAGTAATAGGCTCCTTGTCTCCCCGTAAAAGTATCACGTTGGTTGGTGTTGCGGGTGAGGATGATGGGTGTGAAAAAGACGTTGAGGTGTCCAATGCTCAGGAAGCTATTCTTAGGGTTTTTGAGAGGGTTTGGGAGATGGAGGCAGAGAAAGGTGCTAGTGCTAGTGCTAGCAAAGCAATAAATGGTGAGGTTTGCTGTAAGCTACTTGCGCACACTTCTCAGATTGGCGCGGTTGTGGGGAAAGGGGGGAAGAACATAACGACAATGAGGAACAATAGCGGCTCTAAAATCAGGATTTTACCTGCTCCATATTGTGCGGATAAAAACGAAGAGTTAATTCAAATAACTGGTAGAACTTTGGCTGTAAAGAAGGCACTAGTTGCTGTGTCTCATTGTCTTCAAGATTGTCCGCCACTAGGAAAAGTTCCAGCACCTTTGAGCACACCAACTGTTAGTACTCCTGATATGGCTTCCCATGATCTGCATACTGAACTTTTCCCTCACCTTAATTCATCTTTACACTCCATACAAGAGAGATCTCTATATGATGCTTCGAAGCAAACAACATACTCTAATGAAGAATCTAGACATGATACAAAAGGTACAGAACTTCAGGTTGTGTTCAGACTACTATGCTCTAACAGTGTAGCCGGCAGTGTGATTGGCAAAAAAGGTGCTATAGTTAGAGCTCTTGAAAGCAAAACTGGTGCTTCTATTATCTTTGCACCTCCTTTAAGCAAGTTTGCTGAACGCATTGTCACCATCTCTGCTGTAGAGaACTTTGCATCTAATTACTCTCCTGCACAAGATGCTGTTATTCTTATCTTCGCCAGAATTATTGAAGATCTCTTTGAAAAGGGTTTTCTCTCGGTGTCTAGCATGGAATCACCAGTAGCTGTGCGGCTTTTAGTTGCATCAAGGATTGTTAGTTGCTTGAATAGCAATGAAGGTCGGGTGATTTCTGAAATGAAAGAAGTAACTGGTGCAGATATACAAATAATGCCTGGAAAGGAGGTTTCATGTGGTGCTTCAGATGATGACATGGTAGTACAGATTACTGGTGACTACAGATGCGTACAAAATGCCCTATATAAAGTCACCAGTATAATTAGGGATAATCTCTTGGCCCATGGGGAATCTTCTTTTCCTGCAGGGAATTTGCTGCCTCAGCATGCAGGAGGCTGGTCAATCCCAGAGAATGGAAAATCACACGTTGATTTATATGACAATTTGGAAATTGGAAGAGGAAATAACAAGCTTGCTACTGTGACAAATACTACAGTGGAGATTGTGGTTTCTGACCATGTCTTTGGCTCTGTTTATGGTGAAGATGGTGGTAATCTGGATCAAATCAGACAGATTTCAGGTGCAAATGTTACAGTTTATGATCCTTGTGTTGGTGAAAGTGGAGGGAGGGTTGTCATATCTGGGACACCTGATCAAACCTTTGCAGCACAGAGCTTGCTTCAAGCTTTCATCCAAACCGGTGAAAGAACACCAGAGAGTTAG 1839 0.4388 MKIVNLLPPRSPISDDAVSIMQNLTSSGDHDHPIQTHSNVPTFKRTSNRAKRPVFKVLPGQIGFRLLCHASIVGGLIGNAGAIVSQLRRQTACIIHCIDPISFTDDRVILVIGSLSPRKSITLVGVAGEDDGCEKDVEVSNAQEAILRVFERVWEMEAEKGASASASKAINGEVCCKLLAHTSQIGAVVGKGGKNITTMRNNSGSKIRILPAPYCADKNEELIQITGRTLAVKKALVAVSHCLQDCPPLGKVPAPLSTPTVSTPDMASHDLHTELFPHLNSSLHSIQERSLYDASKQTTYSNEESRHDTKGTELQVVFRLLCSNSVAGSVIGKKGAIVRALESKTGASIIFAPPLSKFAERIVTISAVENFASNYSPAQDAVILIFARIIEDLFEKGFLSVSSMESPVAVRLLVASRIVSCLNSNEGRVISEMKEVTGADIQIMPGKEVSCGASDDDMVVQITGDYRCVQNALYKVTSIIRDNLLAHGESSFPAGNLLPQHAGGWSIPENGKSHVDLYDNLEIGRGNNKLATVTNTTVEIVVSDHVFGSVYGEDGGNLDQIRQISGANVTVYDPCVGESGGRVVISGTPDQTFAAQSLLQAFIQTGERTPES 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1226 612 ProSiteProfiles Type-1 KH domain profile. 315 382 - -
Sto11g1226 612 ProSiteProfiles Type-1 KH domain profile. 535 599 - -
Sto11g1226 612 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 535 604 IPR036612 GO:0003723
Sto11g1226 612 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 45 489 - -
Sto11g1226 612 CDD PCBP_like_KH 176 240 - -
Sto11g1226 612 Pfam KH domain 65 114 IPR004088 GO:0003723
Sto11g1226 612 Pfam KH domain 537 600 IPR004088 GO:0003723
Sto11g1226 612 Pfam KH domain 178 239 IPR004088 GO:0003723
Sto11g1226 612 Pfam KH domain 410 476 IPR004088 GO:0003723
Sto11g1226 612 Pfam KH domain 318 367 IPR004088 GO:0003723
Sto11g1226 612 ProSiteProfiles Type-1 KH domain profile. 407 476 - -
Sto11g1226 612 ProSiteProfiles Type-1 KH domain profile. 61 146 - -
Sto11g1226 612 ProSiteProfiles Type-1 KH domain profile. 173 239 - -
Sto11g1226 612 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 53 115 IPR036612 GO:0003723
Sto11g1226 612 SMART kh_6 406 481 IPR004087 GO:0003676
Sto11g1226 612 SMART kh_6 60 151 IPR004087 GO:0003676
Sto11g1226 612 SMART kh_6 534 604 IPR004087 GO:0003676
Sto11g1226 612 SMART kh_6 172 244 IPR004087 GO:0003676
Sto11g1226 612 SMART kh_6 314 390 IPR004087 GO:0003676
Sto11g1226 612 CDD KH-I 537 600 - -
Sto11g1226 612 Gene3D - 315 485 - -
Sto11g1226 612 Gene3D K Homology domain, type 1 532 607 IPR036612 GO:0003723
Sto11g1226 612 Gene3D K Homology domain, type 1 170 247 IPR036612 GO:0003723
Sto11g1226 612 Gene3D K Homology domain, type 1 62 156 IPR036612 GO:0003723
Sto11g1226 612 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 171 249 IPR036612 GO:0003723
Sto11g1226 612 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 315 371 IPR036612 GO:0003723
Sto11g1226 612 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 45 489 - -
Sto11g1226 612 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 401 483 IPR036612 GO:0003723
Sto11g1226 612 CDD PCBP_like_KH 317 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1226 Sto-Chr11 12128190 12132454 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1226 K21444 - gmx:100793130 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1226 11 12128190 12132454 Sto11g1226 11 12128190 12132454 ECH