Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1194 ATGGCAAGCCATCCTGGAAAAGCTACTCTTTCTAATGGGTCTGTTTATGTGTGCAACTTGCCTTATGGGACTGATGAAAGTATGTTGGCTGAATATTTTGGCACCATCGGATTACTTAAGAAAGATAAACGTACTGGGAGACCAAAGATATGGTTATATCGAGACAAAGAGACTAATGAGCCAAAGGGAGATGCTACTGTAACATATGAGGATCCACATGCTGCTGCAGCTGCTGTTGAATGGTTCAACAACAAAGATTTTCACGGTAGTATGATTGGAGTTTATATAGCAGAGTCAAAAAGCAAGGATGATCAATCGTTCAATGCAGCTGGAGAACCAAGTGTTGCCGGTAATGTTGGTGAACTGGAGGAAACTACTATGGATGTGAATGAGGGTGGTGGAAGAGGTAGAGGTCGAACTGACACTTCAGGCAAACTATGGCAACAAGAAGGCGATTGGTTGTGCCCGAATACAAGCAGTTGCTCCAATGTGAATTTTGCATTTCGTGGTGCATGCAATCGCTGTGGAAGTGCTCGTCCTGCTGGTGCTGCTGGTGTTGCAGGGGCTGGTGGCCGTGGCAGGGGTCGTATTGGACAAGATTCTGGGGGCATTGGCCGTCCAGTTGGTGGTGGACTCTTTGGTCCTAATGATTGGCCTTGTCCTATGTGTGGCAATATCAATTGGGCAAAGAGGACTAAATGCAATATTTGCAATACAAATAAGCCTGGTCATAGTGAGGGTGGTGTAagAGGAGGGCGAGCTGGAGGTTACAAAGAGCTTGATGAAGAAGAAATAGAGGAAACTAAACGGCGTAGGCGGGAGGCTGAAGATGATGGTGAGTTGTACGATGAGTTTGGAAATCTTAAGAAGAAATTTCGTGCCAAAACACAGCAAGCTGAAGCTGCACGAGTGCTTCCTGGTTCTGGGCGTGCTGGATGGGAGGTTGAGGAACTAGGGATTGACAAGGATGGGCGAGAGAGGAGCAGAGACAGAGGAAGGGACCGTGATGAAGGGGAAAATAGGAACAGAGATAGAAATGACAAAGAAAGGCAAAGCATTCGAAGTAGGGATAGGGACAGGGGAAGAGATCGAGACTGGGATTATGATGACCGAAGTAGAGATTATGGGCGTGATAGGGAGCGCAGTAGACACCGTTATTAA 1161 0.4668 MASHPGKATLSNGSVYVCNLPYGTDESMLAEYFGTIGLLKKDKRTGRPKIWLYRDKETNEPKGDATVTYEDPHAAAAAVEWFNNKDFHGSMIGVYIAESKSKDDQSFNAAGEPSVAGNVGELEETTMDVNEGGGRGRGRTDTSGKLWQQEGDWLCPNTSSCSNVNFAFRGACNRCGSARPAGAAGVAGAGGRGRGRIGQDSGGIGRPVGGGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHSEGGVRGGRAGGYKELDEEEIEETKRRRREAEDDGELYDEFGNLKKKFRAKTQQAEAARVLPGSGRAGWEVEELGIDKDGRERSRDRGRDRDEGENRNRDRNDKERQSIRSRDRDRGRDRDWDYDDRSRDYGRDRERSRHRY 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1194 386 Coils Coil 258 278 - -
Sto11g1194 386 ProSitePatterns Zinc finger RanBP2-type signature. 218 237 IPR001876 -
Sto11g1194 386 Pfam Zn-finger in Ran binding protein and others 217 243 IPR001876 -
Sto11g1194 386 Pfam Zn-finger in Ran binding protein and others 150 180 IPR001876 -
Sto11g1194 386 MobiDBLite consensus disorder prediction 245 278 - -
Sto11g1194 386 Gene3D - 12 95 IPR012677 -
Sto11g1194 386 SUPERFAMILY RNA-binding domain, RBD 12 102 IPR035979 GO:0003676
Sto11g1194 386 CDD RRM_SARFH 15 97 - -
Sto11g1194 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 90 IPR000504 GO:0003723
Sto11g1194 386 SUPERFAMILY Ran binding protein zinc finger-like 143 182 IPR036443 -
Sto11g1194 386 ProSiteProfiles Zinc finger RanBP2 type profile. 149 181 IPR001876 -
Sto11g1194 386 MobiDBLite consensus disorder prediction 315 386 - -
Sto11g1194 386 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 1 386 - -
Sto11g1194 386 Gene3D - 213 244 - -
Sto11g1194 386 Gene3D - 147 183 - -
Sto11g1194 386 ProSiteProfiles Zinc finger RanBP2 type profile. 214 243 IPR001876 -
Sto11g1194 386 MobiDBLite consensus disorder prediction 311 386 - -
Sto11g1194 386 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 15 1 386 - -
Sto11g1194 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Sto11g1194 386 SUPERFAMILY Ran binding protein zinc finger-like 210 244 IPR036443 -
Sto11g1194 386 Coils Coil 379 386 - -
Sto11g1194 386 MobiDBLite consensus disorder prediction 255 278 - -
Sto11g1194 386 SMART rrm1_1 14 95 IPR000504 GO:0003723
Sto11g1194 386 SMART zf_4 151 178 IPR001876 -
Sto11g1194 386 SMART zf_4 216 240 IPR001876 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1194 - - aip:107628735 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1194 11 11872731 11884979 Sto11g1194 11 11872731 11884979 ECH