Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1147 ATGAAGATGAACAAAATTAGTTGTGTAGTACTAGTATTTTTGCTGTTGTTGTGGATCAGTGTGTGTGTGGAGGCAAGGAAGAATGACATTAGAAAGACAGAGTTTGATAGAGTTGAGAAATATTCTCCTGCTGATTATATGAGCACTTTTGATGTTGTGTCTTTTGGAGCCAAGGGCAATGGAGTTTTTGATGATTCTAAGCATGGGAAGCTGCCTGCAAAGTTGATAGATGGAAGTGTAGTGGCACCTAGTGAAGCATCTTGTTGGCCAAAATCCAGTTTGTTGGAGTGGATCAATTTCAAATGGGTGCAGAATTTCACTCTGAAAGGCTCTGGTATTGTTGATGCCCAAGGCTCTGACTGGTGGACATCCTCCTCACAATTCTATCACTTGCAGCCTCACGCGGTGCCCTCCAGTTTAGGAACCACGAGCCAAGAGCCTTCGCTCAAGACACATGGCTCAGCTCACAACTTGGAGCGGGCAGGCCAGCTTATTGCCCATCTTCCTGAAAATGCAATGATAGACATTCTTCTACCCATACCACCAGAAAATGACTTGGCTTTAAGATTTTATTCCTGCAAAAATGTAACAGTTAAGGATATCAGAATAAAAAACAGTCCTCTGTGCCATCTAAAATTTGATAGCTCGAAGGGTATTATAGTCAACAACATTACAATTTCCTCCCCGGAGAATAGTCCAAATACTGATGGGATTCACTTGCAAAACTCTGTGGATGTACAAATTCAGTATTCTGATATTGGAAGCGGAGATGACTGTGTATCAATCCAAACAGGTTGTTCCAATGTTCATGTTCACCATCTCAATTGTGGTCCTGGCCATGGTACAAGcataGGAGGATTAGGAAAAGATACAAGTGTAGCATGCGTCTCCAACATCGTCGTTGAGGATATCTCTATGCAAAACACTCTGTACGGAGCAAGAATCAAAACATGGCAGGGAGGAATTGGAATGGTGAAGAATGTGTCATTTTCCAGAATTGAAGTCCATGAAGTGAAGGTTCCAATTGTGATAGACCAATACTACTGTGATAAGCGTTCCTGCAAGAACCAAACAGCAAGTGTGGTGATTTCTGGCGTTAGTGCAGGAATAAAGAAAGCAATCCTCCAAGCTGTGAATTTGACAGCACCAATATCACGAATTAGGCCAAACACAATAGGCATAATGAGTTGTGTAGCTCCTCCTCCCAGGTTTCCCCATCCAGCTGCAACACCATTGGCAGAACCAACGACAGGAGAAGAGAACATAGAACTCATCCAGAATTGA 1284 0.426 MKMNKISCVVLVFLLLLWISVCVEARKNDIRKTEFDRVEKYSPADYMSTFDVVSFGAKGNGVFDDSKHGKLPAKLIDGSVVAPSEASCWPKSSLLEWINFKWVQNFTLKGSGIVDAQGSDWWTSSSQFYHLQPHAVPSSLGTTSQEPSLKTHGSAHNLERAGQLIAHLPENAMIDILLPIPPENDLALRFYSCKNVTVKDIRIKNSPLCHLKFDSSKGIIVNNITISSPENSPNTDGIHLQNSVDVQIQYSDIGSGDDCVSIQTGCSNVHVHHLNCGPGHGTSIGGLGKDTSVACVSNIVVEDISMQNTLYGARIKTWQGGIGMVKNVSFSRIEVHEVKVPIVIDQYYCDKRSCKNQTASVVISGVSAGIKKAILQAVNLTAPISRIRPNTIGIMSCVAPPPRFPHPAATPLAEPTTGEENIELIQN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1147 427 Gene3D - 63 396 IPR012334 -
Sto11g1147 427 SMART pbh1 243 264 IPR006626 -
Sto11g1147 427 SMART pbh1 296 317 IPR006626 -
Sto11g1147 427 SMART pbh1 216 242 IPR006626 -
Sto11g1147 427 SMART pbh1 325 346 IPR006626 -
Sto11g1147 427 Pfam Glycosyl hydrolases family 28 185 367 IPR000743 GO:0004650|GO:0005975
Sto11g1147 427 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 182 367 - -
Sto11g1147 427 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 76 127 - -
Sto11g1147 427 PANTHER - 76 127 - -
Sto11g1147 427 PANTHER - 182 367 - -
Sto11g1147 427 SUPERFAMILY Pectin lyase-like 42 405 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1147 Sto-Chr11 11441300 11445657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1147 20 366 Glycoside Hydrolase AT3G26610 50.254 3.21e-117 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1147 K01213 - gmx:100803027 400.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1147 11 11441300 11445657 Sto11g1147 11 11441300 11445657 ECH