Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1128 ATGAGAGGCTTTAGTTTCAGAGGATTCACATTTATGCTTCTAATTGCATTTCTTGTGTGGTCTTCCAATTTTGAAGTCTGCATTGCAAGAAGAGGCAAGCATTGGAGGCAAAGCAGAGATGTGTCAGCTTCTGTAttcaagaagaaaggaaagaattatGGCAATGGTCACAACCACCATGGATCATCTTCAAAACCAAAGCCTCCATCACACAAATCCTCTCCATCACCATCACCAAAGAAGGCTCCTCCACCATATAAAAGCACTCcatcatcaccaccaccatatcctaaaccaaaaaagtCGAATACACCATCAAATTCACCGCCAAAAGCTTCCCATGGCGGCTATTCTAGCACCGTCTTCAATGTCCTAAATTTTGGAGCTAAAGGAGATGGAAGTACTGATGATACAAAGGCATTCCAAGCTGCGTGGACAGCTGCTTGTAAGGTAGAGGCATCAACAATGCTCATCCCAGAAGATTACGTCTTCTTCGTGGGACCCATTTCATTCTCCGGTCCATACTGCAAACCCAACATAGTTTTTCAGCTTGATGGAACAATTATTGCTCCAACAAACCCCAAGGTTTGGGGCAGAGGATTGTTACAATGGCTGGATTTCACAAAGTTGGTCGGAATTACCATTCAAGGAAAGGGTATTATTGACGGAAgaggctcggtgtggtggcaaGACATCCCATTTGATAATCCCAAAGATGATGAAGAGAAGCTCATAGTACCATTAAACAATACCGTGAGAAAGCCTCCAATGCCGGTTCAAAGTGAGCTGGGAGGGAAAATGCCAAGCATCAAACCAACTGCACTACGTTTCTACGGGAGTTTTAATCCAACGGTCACAGGCATAACGATTCAAAATAGCCCACAGTGCCACCTCAAGTTTGACAATTGCAATGGAGTCCTGGTCCATGACGTGAGCATTTCATCACCAGGCAACAGTCCCAACACAGATGGAATTCACCTTCAGAATTCCAAAGATGTGTTGATTCATACCACCAGTTTAGCTTGTGGAGACGATTGTATATCCATACAAACTGGATGCTCAAATGTATATGTACACAATGTCAACTGTGGGCCAGGGCATGGAATCAGCATTGGAAGTTTGGGGAAGGATAACTCTAGAGCTTGTGTTTCAAACATTACTGTCAGAGATGTCAATATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGCTCAGTGCAGGGGATCACATTCTCAAATATACAAGTTTCTGAAGTTCAACTCCCAATTGTGATTGACCAATTCTATTGTGATAAAAGGACATGCACAAATCATACATCAGCCGTGGCTCTTGCAGGAATCAACTATGAAAGAATAAGGGGAACATACACAGTTAAGCCAGTGCACTTTGCCTGCAGTGATAACCTGCCATGTGTAGATGTTTCTTTAACCTCCATTCAGCTAAAACCAGTTCAAGAACAATACCACCTATACGATCCATTCTGCTGGCAGACTTTTGGTGAACTGAGAACTCCTACAGTTCCACCAATTGCTTGCCTACAGATTGGGAAGCCATCAAGCAACCGGATTCAGTTTGATCATGATTTGTGTTGA 1611 0.4122 MRGFSFRGFTFMLLIAFLVWSSNFEVCIARRGKHWRQSRDVSASVFKKKGKNYGNGHNHHGSSSKPKPPSHKSSPSPSPKKAPPPYKSTPSSPPPYPKPKKSNTPSNSPPKASHGGYSSTVFNVLNFGAKGDGSTDDTKAFQAAWTAACKVEASTMLIPEDYVFFVGPISFSGPYCKPNIVFQLDGTIIAPTNPKVWGRGLLQWLDFTKLVGITIQGKGIIDGRGSVWWQDIPFDNPKDDEEKLIVPLNNTVRKPPMPVQSELGGKMPSIKPTALRFYGSFNPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGNSPNTDGIHLQNSKDVLIHTTSLACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNSRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGITFSNIQVSEVQLPIVIDQFYCDKRTCTNHTSAVALAGINYERIRGTYTVKPVHFACSDNLPCVDVSLTSIQLKPVQEQYHLYDPFCWQTFGELRTPTVPPIACLQIGKPSSNRIQFDHDLC 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1128 536 Gene3D - 108 522 IPR012334 -
Sto11g1128 536 PANTHER - 6 526 - -
Sto11g1128 536 Pfam Glycosyl hydrolases family 28 152 232 IPR000743 GO:0004650|GO:0005975
Sto11g1128 536 Pfam Glycosyl hydrolases family 28 270 488 IPR000743 GO:0004650|GO:0005975
Sto11g1128 536 SMART pbh1 330 351 IPR006626 -
Sto11g1128 536 SMART pbh1 353 373 IPR006626 -
Sto11g1128 536 SMART pbh1 412 433 IPR006626 -
Sto11g1128 536 SMART pbh1 303 329 IPR006626 -
Sto11g1128 536 SMART pbh1 383 404 IPR006626 -
Sto11g1128 536 MobiDBLite consensus disorder prediction 70 104 - -
Sto11g1128 536 ProSitePatterns Polygalacturonase active site. 360 373 IPR000743 GO:0004650|GO:0005975
Sto11g1128 536 SUPERFAMILY Pectin lyase-like 118 531 IPR011050 -
Sto11g1128 536 MobiDBLite consensus disorder prediction 48 115 - -
Sto11g1128 536 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1128 Sto-Chr11 11311534 11315820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1128 2 536 Glycoside Hydrolase AT1G60590 65.934 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1128 - - gmx:100783813 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1128 11 11311534 11315820 Sto11g1128 11 11311534 11315820 ECH