Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1067 ATGGGACTTGTTCAATCCCCCCTGTGTTGCCACTCGAAAGATGAAGAACCACCATCTCACACTAATTCTAATCATCATCTTCATTCAGAATCCTCCACTTCTTCCATTTCTTCCCAGCCAAGTCTTCCTTCTGTTCCTTCCCTCACCACCCCACACCCACACCCTAATCCCTCCCTCCAACCCCAACTCCTAACCACCCTCACTGCTTCCTCTCCCATCTCCTCCCTCACCCTCCACGCCAAATTCCTCTACGCCGCCTCCTCCAATTCCCACATCCACGCATGGCCACGTCACCACCCTCCCCCCCAAAACGACACCGTCGTCCTCGCAACCTCCCACGCACCCGTCAAATCCATGCTCATATCCGGTCAAAACCTCTTCACCGCCCACCAAGACCACCGAATCCGAATCTGGAAGATCCAATTCCAACCCGACGACCCGACCCCATACCCGAAACTCAAACCCCTCACCTCCCTCCCCACACTCCCCGACCGCATCTCAAAACTCTTCTCCGCCACCAACTACGTCGAAATCCGCCGCCACAAGAAATCCACGTGGGTCCACCACGTGGACGCCGTGTCCGCCCTTGCCCTGTCCCGCGACCACACTCTGCTTTACTCTGCCTCCTGGGATCGAACATTCAAAATCTGGAGGACCTCCGATTTCAAGTGCCTAAAGTCCATCAGAGCGCACGAGGACGCCATTAACGCATTGGTCGTGTCCGGCGATGGGGTTGTGTACACGGGCTCGGCGGATAGGAAGATCAAGGCGTGGAAGAATAATGGCTCGCTGGTGGGGACGTTGGAGAAGCATAAATCGGCGGTGAATGCTCTGGCTTTGAGCCCGGACGGGTCGGTGCTGTATTCGGGCGCGTGCGATAGGTCGGTTCTGGTGTGGGAGAAGATGGGGGTGGTGGGTGCGCTGAGAGGGCACACGAAGGCGATTCTGTGTTTGGTGGCTATGGAGGATTTGGTGTGTAGTGGGTCGGCGGATGGTAGTGTTAGGATATGGAGGAGATTTGGGAGTGGTGATGATCAGAACAAGTATTCTTGTGTGGGTGTGTTGGAAGGTCATAGGAAACCTGTCAAGTGCTTGGCTATGGCGGTTCAGTCTAGTAATGATGATGATCACAATGGTGGTGGCTCTGATGATATGAATACTAGTTATTTGGTTTATAGTGGGGGTTTGGATTCTGAGATTAAGTTTTCACAGGAGAGTGTGATGCAGGCAGATGTtccatttgattaa 1248 0.5361 MGLVQSPLCCHSKDEEPPSHTNSNHHLHSESSTSSISSQPSLPSVPSLTTPHPHPNPSLQPQLLTTLTASSPISSLTLHAKFLYAASSNSHIHAWPRHHPPPQNDTVVLATSHAPVKSMLISGQNLFTAHQDHRIRIWKIQFQPDDPTPYPKLKPLTSLPTLPDRISKLFSATNYVEIRRHKKSTWVHHVDAVSALALSRDHTLLYSASWDRTFKIWRTSDFKCLKSIRAHEDAINALVVSGDGVVYTGSADRKIKAWKNNGSLVGTLEKHKSAVNALALSPDGSVLYSGACDRSVLVWEKMGVVGALRGHTKAILCLVAMEDLVCSGSADGSVRIWRRFGSGDDQNKYSCVGVLEGHRKPVKCLAMAVQSSNDDDHNGGGSDDMNTSYLVYSGGLDSEIKFSQESVMQADVPFD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1067 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 259 IPR001680 GO:0005515
Sto11g1067 415 MobiDBLite consensus disorder prediction 1 62 - -
Sto11g1067 415 MobiDBLite consensus disorder prediction 24 45 - -
Sto11g1067 415 Pfam WD domain, G-beta repeat 350 401 IPR001680 GO:0005515
Sto11g1067 415 Pfam WD domain, G-beta repeat 223 259 IPR001680 GO:0005515
Sto11g1067 415 Pfam WD domain, G-beta repeat 263 299 IPR001680 GO:0005515
Sto11g1067 415 Pfam WD domain, G-beta repeat 306 337 IPR001680 GO:0005515
Sto11g1067 415 Pfam WD domain, G-beta repeat 186 217 IPR001680 GO:0005515
Sto11g1067 415 Gene3D - 301 403 IPR015943 GO:0005515
Sto11g1067 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 337 IPR001680 GO:0005515
Sto11g1067 415 SUPERFAMILY WD40 repeat-like 65 401 IPR036322 GO:0005515
Sto11g1067 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 337 - -
Sto11g1067 415 Gene3D - 56 300 IPR015943 GO:0005515
Sto11g1067 415 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 21 404 - -
Sto11g1067 415 SMART WD40_4 179 218 IPR001680 GO:0005515
Sto11g1067 415 SMART WD40_4 221 259 IPR001680 GO:0005515
Sto11g1067 415 SMART WD40_4 348 404 IPR001680 GO:0005515
Sto11g1067 415 SMART WD40_4 301 338 IPR001680 GO:0005515
Sto11g1067 415 SMART WD40_4 102 139 IPR001680 GO:0005515
Sto11g1067 415 SMART WD40_4 261 300 IPR001680 GO:0005515
Sto11g1067 415 SMART WD40_4 60 96 IPR001680 GO:0005515
Sto11g1067 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Sto11g1067 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 217 - -
Sto11g1067 415 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 21 404 IPR045182 -
Sto11g1067 415 CDD WD40 122 402 - -
Sto11g1067 415 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 300 IPR001680 GO:0005515
Sto11g1067 415 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 268 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1067 Sto-Chr11 10831621 10833275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1067 124 342 Acyl Lipid Metabolism Gene Families AT3G18860 25.455 4.90e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1067 - - gmx:100784166 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1067 11 10831621 10833275 Sto11g1067 11 10831621 10833275 ECH