Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1066 ATGAGACTCCATCTTCTCCTCTTCGCAATTTCCCTCTCTCTTTCATTCTCCTTCACTCCCATTTCAGCTCGCTTATTCCCCAATGTATCCGCCATACCCCCTTCCGTTCTCAACAATGTCACTCGCGGCGCGTGGGACGCCTACAAGAACTTCACCGGCTGCCGCCCGGGGAGTACCTACGACGGCTTGTCTAAGCTCAAGAATTACTTTCACCGCTTTGGCTACATCCCTGATTCCTCCTCCAATTTCACCGACGACTTCGACGATGCTCTAGAATCCGCAATTAAAACCTACCAGAAGAATTTCAAACTCAACATTACCGGCCAGCTCGACAATAGTACTCTCGACCATATCGTCCTCCCGCGATGCGGCGTCGCCGATATAATCAACGGAACTTCCACTATGAACTCCGGGAAAGAGAACGCCTCCGCGACGAGTACCAACACGCGATTCCACACCGTCTCTCACTATACTTACTTCGAAGGGACGCCGCGGTGGCCCGACGGGACTCAAACTCTGACCTACGCGTTCTTGCCGGGAAACGGATTAACCGACGACGTGAAGAACGTGTTCGCCACCGCGTTCGACCGGTGGTCGGAGGTGACGACGCTGTCGTTCTCGGAGGCGGAGTCGTACAACTCGGCGGACATCACGATCGGGTTCTACACGGGAGATCATGGCGACGGAGAGCCGTTCGACGGAGTTTTGGGGACTCTGGCCCACGCGTTTTCGCCGACGAACGGGAGGTTCCACCTGGACGGGGATGAGGACTGGGTGGTTTCCGGCGACGTGACGCAGTCGTCGCTGTCGACGGCGGTGGATCTGGAATCGGTGGCGGTTCACGAGATCGGACACTTGTTAGGGTTAGGGCACTCGTCGGTGGAGGAGGCGATTATGTACCCGACGATAGCGGCGAGGACGAGGAAGGTGAATTTAGCGGAAGATGACATTGAGGGTATTCAGAACCTGTACGGTTCCAACCCTAATTACAATGGAACTTCTACGACGTCGTCTCGGCAGAATGACTCCAGCCATGGTTCTCGTCTCAGAGTGGTGGGGTCCACGTGGGGTCTTCTTGTCTTGTTAGCCGTTGGATTTGTGTATTTGATTTTGTAg 1116 0.5493 MRLHLLLFAISLSLSFSFTPISARLFPNVSAIPPSVLNNVTRGAWDAYKNFTGCRPGSTYDGLSKLKNYFHRFGYIPDSSSNFTDDFDDALESAIKTYQKNFKLNITGQLDNSTLDHIVLPRCGVADIINGTSTMNSGKENASATSTNTRFHTVSHYTYFEGTPRWPDGTQTLTYAFLPGNGLTDDVKNVFATAFDRWSEVTTLSFSEAESYNSADITIGFYTGDHGDGEPFDGVLGTLAHAFSPTNGRFHLDGDEDWVVSGDVTQSSLSTAVDLESVAVHEIGHLLGLGHSSVEEAIMYPTIAARTRKVNLAEDDIEGIQNLYGSNPNYNGTSTTSSRQNDSSHGSRLRVVGSTWGLLVLLAVGFVYLIL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1066 371 Pfam Matrixin 170 325 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Sto11g1066 371 PANTHER MATRIX METALLOPROTEINASE 19 364 - -
Sto11g1066 371 CDD ZnMc_MMP 165 325 IPR033739 GO:0008237|GO:0008270
Sto11g1066 371 SMART col_5 162 326 IPR006026 GO:0006508|GO:0008237|GO:0008270
Sto11g1066 371 Pfam Putative peptidoglycan binding domain 63 117 IPR002477 -
Sto11g1066 371 PANTHER MATRIX METALLOPROTEINASE 19 364 - -
Sto11g1066 371 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 164 325 - -
Sto11g1066 371 PRINTS Matrixin signature 118 131 IPR021190 GO:0004222|GO:0006508|GO:0008270
Sto11g1066 371 PRINTS Matrixin signature 191 206 IPR021190 GO:0004222|GO:0006508|GO:0008270
Sto11g1066 371 PRINTS Matrixin signature 215 243 IPR021190 GO:0004222|GO:0006508|GO:0008270
Sto11g1066 371 PRINTS Matrixin signature 278 303 IPR021190 GO:0004222|GO:0006508|GO:0008270
Sto11g1066 371 PRINTS Matrixin signature 312 325 IPR021190 GO:0004222|GO:0006508|GO:0008270
Sto11g1066 371 MobiDBLite consensus disorder prediction 324 345 - -
Sto11g1066 371 Gene3D Collagenase (Catalytic Domain) 53 331 IPR024079 GO:0008237
Sto11g1066 371 SUPERFAMILY PGBD-like 54 128 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1066 Sto-Chr11 10826008 10827123 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1066 - - zju:107435275 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1066 11 10826008 10827123 Sto11g1066 11 10826008 10827123 ECH