Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1022 ATGGCAATAACAATCTCATCAACAGGTCCCGTTTTTTCCCCAAATATCAGCAGCCATGGCGACGCCAATAGCCACCACATTCCTTATCTTCTTCAATTCTTGAAGCAACCTACCCCCATTCCCATCTCTCACCTCAAACAAATTCACTCCCAAACGCTGCGTTCCATTCCTACCCACCACCCACAATTCCTCTTCCTCTATAGCAGAATCCTCCATTTCTCCTCCCTAGCCGATCTTCATTACGCCACTCGGCTTTTCAATAACATCCCAAATCCCAACTCCTTCATGTGGAACACTCTCATCAGAGCCTATTCCCGAAGCACCCATTTCAAAGAACACGCCATAGCGCTTTACAGAGCCATGGTGGAAGAACAAAGTGTCGTCCCTGATAAACATACATACCCATTTGTTCTAAAGGCTTGTGCgtatttgttttgtttgtttgaaGGGAAACAAGTGCATGCGCATCTTTTGAAACTTGGGTTTGAGTCTGATCTTCATATTTGTAACAGTTTGATTCATTTCTATGCTACTTGTGGGTGTTTAGACTTGGCCCAGAATGTGTTTGATAAAATGTCTGAGAGAAGTAAGGTTTCGTGGAATGTATTAATTGATTCCTATGTAAGGGCCGGTGAATTTGACACTGCCATGAATTTGTTTATTGAGATGCAAAACGCATATGAGCCTGATAATTATACAATGCAGAGTGTTATTAGTGCTTGTGCTGGTCTGGGCGCCCTGTCCTTAGGCTTGTGGGCTCATgcttatattttgaaaaagtgTGATAAGAATATGAATGATGATGTTTTGATCAACACTTGCTTGGTGGATATGTACTGTAAATGTGGATCCGTAGAAATTGCTGAACAAGTCTTTGAAAGCATGACACTAAAAGATGTAAATTCATGGAATTCCATGATTTTAGGTCTTGCCTTGCATGGCAAGGCTGAGTCATCATTGGAGTATTTCACCCGTATGGTGAAGACGGAGAGATTTTATCCCAACTCTATCACTTTTGTTGGTGTACTGAATGCTTGTAATCACAGAGGCAAGGTTAAAGAGGGGCTTGAGTATTTTGACATGATGATTAAGGATTATAATATAGAACCGCGATTAGAGCACTATGGATGTcttgttgatcttcttgctcgTGCTGGGCGCATTGAAGAAGCTCTGAACTTGGTTTCTGAAATGCCAATGAAACCTGATGCTGTAATATGGAGAAGTCTTTTGGATGCTTGCTGTAAGCAACAAGCAAGTGTTGAGCTAAGTGAAGAAATGGCCAAGCAGATCTTTGAGTTAGAGGAGAGTGTTTGTAGTGGAGTTTATGTTCTTCTTTCAAAAGTCTATGCCTCAGCAAGAAGATGGAATGATGTAGGATTGCTTAGAAAACTAATGACTGATAAGGGTGTGACTAAGGAGCCTGGGTGTAGTTTGGTAGAGATAGATGGTGTAACTCATGAATTTTTTGCTGGAGACACCTCTCATCCACAAAGTAAGAATATATACAAGTTTCTTAACAAGATTGAGAAGAAGCTAGAATCAATTGGGTATTCACCTGATTACTCAGGGGCACCCTTGGTTGATGAAGCTCATGATGGAAAACAGAGTACCCTGAGGCTGCACAGTGAGAGGTTGGCCATAGCTTTTGGACTCTTGAGCTTAAAACCAGGTATGCCAATAAGAATATTTAAGAATCTAAGAGTGTGCAATGATTGCCACAAGGTAACTAAATTGATCTCTGAAATTTATAATGTGGAGATAATTGTAAGGGATCGTGCTCGGTTCCATCACTTTAAAGATGGAACCTGTTCTTGTATGGATTATTGGTAA 1833 0.3983 MAITISSTGPVFSPNISSHGDANSHHIPYLLQFLKQPTPIPISHLKQIHSQTLRSIPTHHPQFLFLYSRILHFSSLADLHYATRLFNNIPNPNSFMWNTLIRAYSRSTHFKEHAIALYRAMVEEQSVVPDKHTYPFVLKACAYLFCLFEGKQVHAHLLKLGFESDLHICNSLIHFYATCGCLDLAQNVFDKMSERSKVSWNVLIDSYVRAGEFDTAMNLFIEMQNAYEPDNYTMQSVISACAGLGALSLGLWAHAYILKKCDKNMNDDVLINTCLVDMYCKCGSVEIAEQVFESMTLKDVNSWNSMILGLALHGKAESSLEYFTRMVKTERFYPNSITFVGVLNACNHRGKVKEGLEYFDMMIKDYNIEPRLEHYGCLVDLLARAGRIEEALNLVSEMPMKPDAVIWRSLLDACCKQQASVELSEEMAKQIFELEESVCSGVYVLLSKVYASARRWNDVGLLRKLMTDKGVTKEPGCSLVEIDGVTHEFFAGDTSHPQSKNIYKFLNKIEKKLESIGYSPDYSGAPLVDEAHDGKQSTLRLHSERLAIAFGLLSLKPGMPIRIFKNLRVCNDCHKVTKLISEIYNVEIIVRDRARFHHFKDGTCSCMDYW 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1022 610 Pfam DYW family of nucleic acid deaminases 517 610 IPR032867 GO:0008270
Sto11g1022 610 SUPERFAMILY TPR-like 144 329 IPR011990 GO:0005515
Sto11g1022 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Sto11g1022 610 Gene3D Tetratricopeptide repeat domain 258 362 IPR011990 GO:0005515
Sto11g1022 610 Gene3D Tetratricopeptide repeat domain 46 145 IPR011990 GO:0005515
Sto11g1022 610 Pfam PPR repeat family 92 142 IPR002885 -
Sto11g1022 610 Pfam PPR repeat family 198 242 IPR002885 -
Sto11g1022 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 226 IPR002885 -
Sto11g1022 610 Pfam PPR repeat 374 399 IPR002885 -
Sto11g1022 610 Pfam PPR repeat 302 328 IPR002885 -
Sto11g1022 610 Pfam PPR repeat 273 298 IPR002885 -
Sto11g1022 610 Pfam PPR repeat 338 365 IPR002885 -
Sto11g1022 610 Pfam E motif 420 481 IPR046848 -
Sto11g1022 610 Pfam Pentatricopeptide repeat domain 159 194 IPR002885 -
Sto11g1022 610 TIGRFAM PPR: pentatricopeptide repeat domain 273 296 IPR002885 -
Sto11g1022 610 TIGRFAM PPR: pentatricopeptide repeat domain 96 130 IPR002885 -
Sto11g1022 610 TIGRFAM PPR: pentatricopeptide repeat domain 375 398 IPR002885 -
Sto11g1022 610 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Sto11g1022 610 TIGRFAM PPR: pentatricopeptide repeat domain 198 225 IPR002885 -
Sto11g1022 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 128 IPR002885 -
Sto11g1022 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Sto11g1022 610 Gene3D Tetratricopeptide repeat domain 363 433 IPR011990 GO:0005515
Sto11g1022 610 PANTHER BNAC04G18690D PROTEIN 39 552 - -
Sto11g1022 610 Pfam E+ motif 486 513 IPR046849 -
Sto11g1022 610 PANTHER OS01G0913400 PROTEIN-RELATED 39 552 - -
Sto11g1022 610 Gene3D Tetratricopeptide repeat domain 146 248 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1022 Sto-Chr11 10505850 10507682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1022 46 610 Glycoside Hydrolase AT3G49170 35.192 1.42e-120 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1022 - - gmx:100791183 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1022 11 10505850 10507682 Sto11g1022 11 10505850 10507682 ECH