Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1006 atggaagaagaagaacgaAGAAACGAAGCAcatgagaagaagaaagaggaaaagGCATTCAAGCAGCGAATATGGAGTTGGGGTGCAGGAACTGATGGGCAATTGAGTACCGGCACTCTCCAAGATCACATCCTCCCTCAACTCCTTCATCATCCATCCCTCTCCTCCGCCGCCATCTCTTCCCTTGCCTGCGGCGGCGCTCACGTTATCGCCTTGACCTCCGCTGGGAAGGTGCTGACATGGGGTAGGGGAAATTCTGGGCAACTAGGCCAAGGAGAACTTACTAATCATGTCTTGTATCCAAAGCCTGTGACATCCTTAGACAGCTTCTTCATAACCCATGTCTCTGCTGGTTGGAGCCACTCTGGTTTTGTTTCAGATAATGGGTGTCTATTCACTTGTGGTGATGGCTCCTTTGGTCAGCTTGGTCATGGTGATTACATCTCCCACTGCTCACCTCTTAAAGTGTCTTACTTTGTTAATAGGTTAGTTGCGCAGATAGCTTGCGGCATGCGCCATTCCTTAGTCCTGTTAAAAGATAGTTCAATGAATCAAGTTTATGGATTTGGATTTGGAAAGCGTGGTCAATTGGGTATCTCCAAAGAGAAGTTGAAATCTGTCAATATTCCTGAAGTTCTTAGTGGATTTGAAGATAAGGAAATTGTTGAAATTGCTGCAAATGGAGATCATAGTGCTGCAGTTTCTGTTGATGGGCATCTTTACACTTGGGGAAGAGGGTTCAAAGGCTGTTCAGATGCTCACTCTCCTCAGCTATTAAATTCTTCTTTGAGCTTTACCAAAGCTACTCTAGGATGGAACCATGCTTTAGCTTTAACTGGCGAAGGGGAAGGTTTTATGGTTGGTGGCAATCACCTTGGAGTGCTTACTGATCCTAAGAATTTGAACCCGGCAAAGCAACCATCTGAAAACTTGAGAGAAACCAATATGGAGAAAGTCCCTGGTCTGGATGGGATAAAGATAAGTGATATTGCTGCTGGAGCTGAGCATTCTGCCCTAGTCACCGAGAATAGAGAAATAAAGACATGGGGTTGGGGTGAGCATGGGCAACTTGGGTTGGGTGATACCAGTGACCAAATGAGTCCTCATACAGTAAGTCTTGGGTGTGAGCTGAATGAAACTGAATCAATCAGAATTTTCTGTGGGAGTGGCTTCACATTTGCTCTAACCATGCATTCTAACCCTTCTCAACATTGA 1215 0.4395 MEEEERRNEAHEKKKEEKAFKQRIWSWGAGTDGQLSTGTLQDHILPQLLHHPSLSSAAISSLACGGAHVIALTSAGKVLTWGRGNSGQLGQGELTNHVLYPKPVTSLDSFFITHVSAGWSHSGFVSDNGCLFTCGDGSFGQLGHGDYISHCSPLKVSYFVNRLVAQIACGMRHSLVLLKDSSMNQVYGFGFGKRGQLGISKEKLKSVNIPEVLSGFEDKEIVEIAANGDHSAAVSVDGHLYTWGRGFKGCSDAHSPQLLNSSLSFTKATLGWNHALALTGEGEGFMVGGNHLGVLTDPKNLNPAKQPSENLRETNMEKVPGLDGIKISDIAAGAEHSALVTENREIKTWGWGEHGQLGLGDTSDQMSPHTVSLGCELNETESIRIFCGSGFTFALTMHSNPSQH 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1006 404 Coils Coil 1 21 - -
Sto11g1006 404 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 167 177 IPR000408 -
Sto11g1006 404 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 76 128 IPR000408 -
Sto11g1006 404 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 330 340 IPR000408 -
Sto11g1006 404 Gene3D - 2 307 IPR009091 -
Sto11g1006 404 SUPERFAMILY RCC1/BLIP-II 318 397 IPR009091 -
Sto11g1006 404 Pfam Regulator of chromosome condensation (RCC1) repeat 185 234 IPR000408 -
Sto11g1006 404 Pfam Regulator of chromosome condensation (RCC1) repeat 23 72 IPR000408 -
Sto11g1006 404 Pfam Regulator of chromosome condensation (RCC1) repeat 128 177 IPR000408 -
Sto11g1006 404 Pfam Regulator of chromosome condensation (RCC1) repeat 76 124 IPR000408 -
Sto11g1006 404 Pfam Regulator of chromosome condensation (RCC1) repeat 348 395 IPR000408 -
Sto11g1006 404 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 129 180 IPR000408 -
Sto11g1006 404 SUPERFAMILY RCC1/BLIP-II 22 299 IPR009091 -
Sto11g1006 404 Gene3D - 308 400 IPR009091 -
Sto11g1006 404 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 344 398 IPR000408 -
Sto11g1006 404 PRINTS Chromosome condensation regulator RCC1 signature 23 39 IPR000408 -
Sto11g1006 404 PRINTS Chromosome condensation regulator RCC1 signature 59 72 IPR000408 -
Sto11g1006 404 PRINTS Chromosome condensation regulator RCC1 signature 78 94 IPR000408 -
Sto11g1006 404 PRINTS Chromosome condensation regulator RCC1 signature 167 183 IPR000408 -
Sto11g1006 404 PRINTS Chromosome condensation regulator RCC1 signature 271 289 IPR000408 -
Sto11g1006 404 PRINTS Chromosome condensation regulator RCC1 signature 339 360 IPR000408 -
Sto11g1006 404 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 24 393 - -
Sto11g1006 404 PANTHER OS01G0777800 PROTEIN 24 393 - -
Sto11g1006 404 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 22 75 IPR000408 -
Sto11g1006 404 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 184 237 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1006 Sto-Chr11 10379919 10382476 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1006 - - gmx:100814103 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1006 11 10379919 10382476 Sto11g1006 11 10379919 10382476 ECH