Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2704 ATGGCATCAAACACATTTGTTCCTATGTTGATTGGGCATTTTAATGATTTCGGGACACTGGCAGATACTTACCTTACCGCAATTGATGTTGGATTGGGAACTGATGAAGTTGAAGTCATAATTCTGAAGTCTCTGGACAATAACGGATATAAGGAATTGCACAATACTGGTGGCACAATATTTTCTCTGTCTCATGGAACAATCCCTGAATGGTTTGACCTTCGTACCAAGGGTGGATCTATTTCCTTCTGGTTTCGTAACAAATTCCCAGCATTAGTTGTATGTCTTGTTATTGGATTACCAAATAAGGAACTTTTCTCCATCCGGATTAGAAGCGGCGGCGTGATCATCAATGGGAATGAACGATTTGATGTCCCTGTAATTGATGCCTGTGTGATCATCAATGGGAATGAACAACGTCATGTCCCCAGTACCACTTTCATAGCAGAAGATCATATATTTGTTTTTGATCTGCGAAGTATAGAATATAGTGATAAGGTGGAAGACGCATCTCTGGAAAAGGAGTGGAAGCATGTGGAGATTTATTATGAAGATCGATCTATACGGCTTTCCAACGAGGAGGACTCAATTGAAGGGGTCTGTAAGGAGAGTGGAATTTATGTATTGAAGGAGATAGACAAGATGGAGGATATCAGATTCACAAATCCTTATATTGACAACGAGGGAAATGAGATAAGTGGCCATGCACCTTCAGAAACAGTGATTTCAGGCTCAGATTCAACAATGTCAAGCAGCACGATTAGTGACACTAGTAGTAGTTATGGAGGCATGAGTCTACCTTTATCCAAAGAATTGTTGAAGAAATACAGAGGTACTAATAATATTGAAGGCTTAATGCTAGACATGCCTGAACCAGAAGAAAAGGTGCATATAAGTGGCAAAGCCTTTGCAAATATGAAGAAGCTTAGACTTCTTAGGGTACATAATGCAAACATTTCAGATGACATTCAATATCTTTCTGATGAATTAAGGTTAATTGATTGGCCAAGATACCCTTCTTCAACTCTGCCTCCAAACTTCCATCCTAAGAGGCTTGTTTCTTTAAACCTCAGTCATGGTCGCATCAAGCACTTATGGAAGGGAGCTAAGATACTCAGAGATCTGAAACTTGTGTCCTTTAACTGCTGTGAATACCTCACAGAAATTCCAGACTTCTCCATGATTCCAAACCTTGAGAGTTTAAACCTAGAACACTGTAAAACCCTAGTGAAGATTCATGAATCCATAGGATCTCTATCTAAGCTTGTTACCTTAAACCTTGTCTTCTGCTCCAATCTCAAGTCTCTTCCAAGCTATTTCAAGTTAAAATATCTTCACACTCTTCTCCTTACTGGGTGCTCAAATCTCAGAAAATTTCCTGAGATTTCTGACAAAATGGAATTTGTTGAAGAAATCCTTCTTGAAGGGACTTCCATAAAAGAACTGCCTCAATCAATAGAAAATCTAATTGCTCTGAAATGCTTGGTCTTAGATTTCTGTCAAAAGCTTGAGAATCTTCCTAGTAGCATTCAGAATCTGCAATACCTCACAACCCTTTCTCTCACAAATTGCTCTAAACTTAAAGAGATTCCAAAGCTTCCATTAAAGACAAGTTATATAGATACAAATAATTGCACATCATtggaaaattttccagatttgTCCACCACATCAAGTTTTTCATCTTCACAGGAATTTCCAAGGTTTTCTCACATGAGTTTCATCAACTGCCACAGACTTATTCATAAAAAGATTCAGGACCATATAGCAAACTATTTGTTCTATGAGGAATCCATTTCTGAAGAAGTAATATTTCCAGGAAGCAAGATTCCAGACTGGTTTGATTATCACAGCACAAATGATTCTCCAATGATTTCACTTGACGTAGCTTCAAGGCTATATGGAAAGCCAGTGGAGTTGTATTTTGGTGCAGTTTTTGAGTTAAACGACAAAGCTAGAAGAAGAGGATCAGGAAGTGGTATATTCTTATGTGTCTATGAGATTGTGATCAACCATAAAAAGACTTTAATCATAGACACAAGTTTTGATTCATTGGAGACAAGTCATGTGTGGCTAAGTAAGATTAAGTTTGGTCGTTTGATGTGGCCCTATATCAACCATAGTAAGAGTAGTAGTATGCGATATTGGAATCATGTTGAGGTTTCATTTAGGATCTCTCCAGTTGAAGTATCATCATCCAAGGATGATGATGTGAAAGTAAATGCAGTACTGAAATGTTGTGGGTTTCATATTTCATGCAAGCAAGAAGGATCACTCCAGAAATGCGTAAGCCTTGACCACCTCAAGCGAATCCATGCTCTCTCTATAACGCTTGGATTTCTTCACAATCTCCAATCTTTCGCTTGTAAGCTGCTTGAAGCTTACAAGAATCTGCACAAACCCCAGGAAGCTCAAAGGGTCTTCGACCACCAGATTCCACACCCCGACATTATCTCTTGGACATCCCTCCTTAATCTCTACCTCCACTCTGGTCTTCCCACCGAATCTCTCGCTGTCTTTTCTCGTTTCATAAACATCGGATTGAGGAGACCCGACAGCTTCTTGGTTGTCGGAGCTCTGTCGTCATGTGGGCGTGGGAGGGATTTGATCAGAGGGAGGATCATCCATGGGATGATATTGAGGAATCGGTTGGATTTGAATCCGATTGTGGGTAATGCTCTGATTGATATGTATTGTAGAAATGGGGGAATTGAAGTGGCTGTTTTGGTTTTTGATAGAATGAGTATGAGAGATGTATTTTCATGGACTAGTTTGTTCAATGGGTATGTAATGTGTAACAATCTGGGTTCTGCACGTAAAGTGTTCGAGGAAATGCCTGAGAGAAATTCTGTTTCTTGGACGGCTATGATCAGTGGTTATGTCAAAGGAGGAGCTCCAATTCAAGCTTTGAAGCTCTTTAAGAAGATGGAAGCCTATCCTAGTGCAGCCACAGTAGCGGCGGTGCTCTCGGGTTGTGCCGATACCGGTGCTCTTCATTTCGGTCAGTGCATCCATGGAAATGTCAACAAAACAAGCCTGAAAATGGATGTCACAGTGAGCAATGCTATGATGGATATGTACTCTAAGAGTGGAAGGCTTGATTTGGCTATAGGGGTATTCAATGAAATCTTGCACAAGGATGTATTTTCTTGGACAACAATGATTTCAGGGTATGCATATCATGGGGAAGGACACTATGCTTTGGAGGTATACTCTCACATGGTGGAATCAGGGATTCTTCCAAATGAGGTAACTCTTTTGGCACTTTTAACTGCTTGTAGCCATGAAGGTCTAGTTATGGAGGGGAAGAAGTTGTTCACTAGAATGATTCATTACCATTGTTTGAAACCCAATATTGAGCACTATGGATGCTTAGTGGATCTTCTTGGCCGAGCAGGGTTTCTTGAAGAAGCAAAACAAGTGATTGAGTTTATGCCTATGAATCCTGATGTAGCTATCTGGAGGTCATTACTCACAGCTTGCTTAGTCCATGGGAATTTGAGCTTAGCTGAAATAGCAGGGAAGAAGGTGATGGAACTAGATCtaagtgatgatgatgaagatggtgtTTATATGCTTCTGTGGAATGTGTATTATGCTGCAAAAAAGTGGACAGAAGCATCAGAGATAAGGAAGTGGATGAGGGATAGGAGAGTTAAGAGAAAGCCTGGTTGTAGTTGGATTGAGGTGAATGGTGTTGTTAATGAATTCCTTGTGGAAGACAAGTCGCATAGTGTTAGAGCTGAGCTTTACTACTTGCTAAAGGCAATGAAGGAGCACTCAAAAACAGATCCATTGGGTATGGATAATCACACGCATAGctcaattatttaa 3834 0.3959 MASNTFVPMLIGHFNDFGTLADTYLTAIDVGLGTDEVEVIILKSLDNNGYKELHNTGGTIFSLSHGTIPEWFDLRTKGGSISFWFRNKFPALVVCLVIGLPNKELFSIRIRSGGVIINGNERFDVPVIDACVIINGNEQRHVPSTTFIAEDHIFVFDLRSIEYSDKVEDASLEKEWKHVEIYYEDRSIRLSNEEDSIEGVCKESGIYVLKEIDKMEDIRFTNPYIDNEGNEISGHAPSETVISGSDSTMSSSTISDTSSSYGGMSLPLSKELLKKYRGTNNIEGLMLDMPEPEEKVHISGKAFANMKKLRLLRVHNANISDDIQYLSDELRLIDWPRYPSSTLPPNFHPKRLVSLNLSHGRIKHLWKGAKILRDLKLVSFNCCEYLTEIPDFSMIPNLESLNLEHCKTLVKIHESIGSLSKLVTLNLVFCSNLKSLPSYFKLKYLHTLLLTGCSNLRKFPEISDKMEFVEEILLEGTSIKELPQSIENLIALKCLVLDFCQKLENLPSSIQNLQYLTTLSLTNCSKLKEIPKLPLKTSYIDTNNCTSLENFPDLSTTSSFSSSQEFPRFSHMSFINCHRLIHKKIQDHIANYLFYEESISEEVIFPGSKIPDWFDYHSTNDSPMISLDVASRLYGKPVELYFGAVFELNDKARRRGSGSGIFLCVYEIVINHKKTLIIDTSFDSLETSHVWLSKIKFGRLMWPYINHSKSSSMRYWNHVEVSFRISPVEVSSSKDDDVKVNAVLKCCGFHISCKQEGSLQKCVSLDHLKRIHALSITLGFLHNLQSFACKLLEAYKNLHKPQEAQRVFDHQIPHPDIISWTSLLNLYLHSGLPTESLAVFSRFINIGLRRPDSFLVVGALSSCGRGRDLIRGRIIHGMILRNRLDLNPIVGNALIDMYCRNGGIEVAVLVFDRMSMRDVFSWTSLFNGYVMCNNLGSARKVFEEMPERNSVSWTAMISGYVKGGAPIQALKLFKKMEAYPSAATVAAVLSGCADTGALHFGQCIHGNVNKTSLKMDVTVSNAMMDMYSKSGRLDLAIGVFNEILHKDVFSWTTMISGYAYHGEGHYALEVYSHMVESGILPNEVTLLALLTACSHEGLVMEGKKLFTRMIHYHCLKPNIEHYGCLVDLLGRAGFLEEAKQVIEFMPMNPDVAIWRSLLTACLVHGNLSLAEIAGKKVMELDLSDDDEDGVYMLLWNVYYAAKKWTEASEIRKWMRDRRVKRKPGCSWIEVNGVVNEFLVEDKSHSVRAELYYLLKAMKEHSKTDPLGMDNHTHSSII 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2704 1277 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1016 1046 IPR002885 -
Sto10g2704 1277 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 816 850 IPR002885 -
Sto10g2704 1277 Pfam PPR repeat family 1046 1094 IPR002885 -
Sto10g2704 1277 Gene3D Tetratricopeptide repeat domain 728 869 IPR011990 GO:0005515
Sto10g2704 1277 Gene3D Tetratricopeptide repeat domain 1101 1272 IPR011990 GO:0005515
Sto10g2704 1277 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 918 952 IPR002885 -
Sto10g2704 1277 Pfam E motif 1164 1229 IPR046848 -
Sto10g2704 1277 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 762 1264 - -
Sto10g2704 1277 Gene3D Ribonuclease Inhibitor 293 464 IPR032675 -
Sto10g2704 1277 SUPERFAMILY L domain-like 297 552 - -
Sto10g2704 1277 TIGRFAM PPR: pentatricopeptide repeat domain 1021 1047 IPR002885 -
Sto10g2704 1277 TIGRFAM PPR: pentatricopeptide repeat domain 1049 1083 IPR002885 -
Sto10g2704 1277 TIGRFAM PPR: pentatricopeptide repeat domain 920 949 IPR002885 -
Sto10g2704 1277 TIGRFAM PPR: pentatricopeptide repeat domain 951 977 IPR002885 -
Sto10g2704 1277 Pfam PPR repeat 818 847 IPR002885 -
Sto10g2704 1277 Pfam PPR repeat 920 949 IPR002885 -
Sto10g2704 1277 Pfam PPR repeat 951 977 IPR002885 -
Sto10g2704 1277 Pfam PPR repeat 892 917 IPR002885 -
Sto10g2704 1277 Pfam PPR repeat 1121 1146 IPR002885 -
Sto10g2704 1277 Gene3D Tetratricopeptide repeat domain 1001 1100 IPR011990 GO:0005515
Sto10g2704 1277 Gene3D Tetratricopeptide repeat domain 872 1000 IPR011990 GO:0005515
Sto10g2704 1277 Gene3D Ribonuclease Inhibitor 465 573 IPR032675 -
Sto10g2704 1277 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1047 1081 IPR002885 -
Sto10g2704 1277 PANTHER OS02G0116100 PROTEIN 762 1264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2704 Sto-Chr10 37261128 37284310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2704 762 1251 Glycoside Hydrolase AT3G49170 35.400 4.10e-90 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2704 - - gmx:102666130 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2704 10 37261128 37284310 Sto10g2704 10 37261128 37284310 ECH