Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2613 ATGAATCTGAATCAACACGTCTTGGCGTTGCTTGGAAGAAGCAACAATCTCAATCATCTCAAGCAACTCCAAGGCTTCCTCATCGCCCTCGGCCATGGCCAAACCCACTTCTACGCTTTCAAGCTCGTCCGCTTCTGTACTCTCACACTCTCCAATCTCCATTACGCTCGCCTCATCTTCGACCATCTCAAATCGCccaacatctatctctacaccGCCATGATCACCGCCTACGCCTCTCAGCCCGATCACGTCTCTGCCTTTGTCTTATTTCGCGACATGGTTCGCCGACGGAGCCCCGAACCCGACCAATTCGTCTACCCTCACGTCTTGAAGTCCTGCCCTGAGGTTTTGGGATCGAACGGCACCGATTCGGTTCACGCCCAGGTTTTGAAATCGGGTTTTGGGTGTTACCCTGTTGTGCAGACGGCTCTGGTGGATTCTTACTCGAGGGTTTCGTCCGGTGTTGGGAATGCTAGGaaggtgtttgatgaaatgtGTGAGAGAAATGTTGTGTCTTGGACCGCCATGGTTTCTGGGTATACGAGGGTGGGGGATATTGAGAATGCAGTGAAGTTGTTTGAGGAAATGCCTGAGAGAGATGTCCCATCTTGGAATGCTCTTATTGCGGGATGCACTCAGAATGGGTTTTTCTCTGAGGCAATCAAGTTGTTTAGAAAAATGGTTATTCTTGCTATGGACAAACAGTATCCATCTAACAACCCAAACCCAGTCACTGTGGTTTGTGCACTTTCAGCTTGTGGCCACACAGGGATGCTGCAGCTTGGAAAATGGATTCATGGTTATATGTACAAAAATGGTTTCGTCCTTGACTCATTTACCTCAAATGCTCTTGTAGATATGTATGGGAAATGTGGGAACCTTAAGGAGGCAAGAAAGGTTTTTGACATGAATCCAGAAAAAGGCTTAACATCATGGAATTCGATGATTAATTCGTTTGCACTTCATGGGCAAAGTGATAGTGCAATTGCCATTTTTGAGCAAATGATGGATTATGGTAATGATATAAGACCTGATGAAGTCACCTTCATTGGTTTGCTAAATGCTTGTACCCATGGAGGTTTAGTGGAAAAAGGTTATTGCTATTTTCAGATGATGGTTGATAAATTCTTGATAAAGCCCCGGATTGAGCACTATGGGTGTTTGATAGACCTTCTTGGTCGAGCAGGAAGATTTGATGAGGCAATGGAAGTTGTTAAGGGAATGAGCATGGAACCTGATGAGGTCGTTTGGGGTTCTTTATTTAATGGATGCAAGATTCATGGCCGCACAGATTTGGCAGAATTTGCTGCCAAAAAGTTGATTGAAATAGATCCAAAAAATGGTGGTTATGGTTTAATGTTGGCTAACGTATATGGGGAGTTAGGAAAGTGGGACGAAGTTCGGAAGGTAAGGAGAACGTTGAAGAAGCGAAATTCTTACAAAATCCCAGGATGCAGCTGGATCGAGGTTGATGACCAAGTTTTTCAGTTCTATTCTGTTGATAAATCAAATCCAAAAACAGAAGAAATATACAGTATTTTGGAGAGTCTTATTGGTTTTAGAAGTGAAGTTATGGTTGATATATTAGTACTTAGTTGA 1602 0.4288 MNLNQHVLALLGRSNNLNHLKQLQGFLIALGHGQTHFYAFKLVRFCTLTLSNLHYARLIFDHLKSPNIYLYTAMITAYASQPDHVSAFVLFRDMVRRRSPEPDQFVYPHVLKSCPEVLGSNGTDSVHAQVLKSGFGCYPVVQTALVDSYSRVSSGVGNARKVFDEMCERNVVSWTAMVSGYTRVGDIENAVKLFEEMPERDVPSWNALIAGCTQNGFFSEAIKLFRKMVILAMDKQYPSNNPNPVTVVCALSACGHTGMLQLGKWIHGYMYKNGFVLDSFTSNALVDMYGKCGNLKEARKVFDMNPEKGLTSWNSMINSFALHGQSDSAIAIFEQMMDYGNDIRPDEVTFIGLLNACTHGGLVEKGYCYFQMMVDKFLIKPRIEHYGCLIDLLGRAGRFDEAMEVVKGMSMEPDEVVWGSLFNGCKIHGRTDLAEFAAKKLIEIDPKNGGYGLMLANVYGELGKWDEVRKVRRTLKKRNSYKIPGCSWIEVDDQVFQFYSVDKSNPKTEEIYSILESLIGFRSEVMVDILVLS 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2613 533 Pfam E motif 431 490 IPR046848 -
Sto10g2613 533 Gene3D Tetratricopeptide repeat domain 236 364 IPR011990 GO:0005515
Sto10g2613 533 PANTHER - 2 521 - -
Sto10g2613 533 TIGRFAM PPR: pentatricopeptide repeat domain 204 229 IPR002885 -
Sto10g2613 533 TIGRFAM PPR: pentatricopeptide repeat domain 172 202 IPR002885 -
Sto10g2613 533 TIGRFAM PPR: pentatricopeptide repeat domain 312 340 IPR002885 -
Sto10g2613 533 TIGRFAM PPR: pentatricopeptide repeat domain 386 410 IPR002885 -
Sto10g2613 533 Pfam PPR repeat 70 97 IPR002885 -
Sto10g2613 533 Pfam PPR repeat 281 304 IPR002885 -
Sto10g2613 533 Pfam PPR repeat 172 201 IPR002885 -
Sto10g2613 533 Pfam PPR repeat 385 409 IPR002885 -
Sto10g2613 533 Pfam PPR repeat 204 229 IPR002885 -
Sto10g2613 533 Gene3D Tetratricopeptide repeat domain 365 445 IPR011990 GO:0005515
Sto10g2613 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Sto10g2613 533 Gene3D Tetratricopeptide repeat domain 5 117 IPR011990 GO:0005515
Sto10g2613 533 Gene3D Tetratricopeptide repeat domain 121 235 IPR011990 GO:0005515
Sto10g2613 533 Pfam PPR repeat family 311 357 IPR002885 -
Sto10g2613 533 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Sto10g2613 533 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 521 - -
Sto10g2613 533 SUPERFAMILY TPR-like 63 471 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2613 Sto-Chr10 36391892 36393493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2613 57 519 Glycoside Hydrolase AT3G49170 31.034 5.69e-83 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2613 - - gmx:100806937 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2613 10 36391892 36393493 Sto10g2613 10 36391892 36393493 ECH