Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2564 ATGGGAAAGCAAAAGCAGCAAGTCATTTCCCGCTTCTTCGCGCCCAAATCCAATGCTCCATCGACGACCgactcatcttcttcttcttctcgtccGAACCCTCAAACGCCACCTCCCAAAATCTCAGCTACCGTGAGTTTCTCCCCCTCCAAACGCCTCCTCGCGTCTCAGCTAACGTCACCAGAGAAGCCACCCAAACTTCCCAAACTCTCTCctcatacccaaaaccctatacctccTCTACCCGATCCCTCCCTCCACCAGAGATTCCTCCGGAAGTTTCTCGAACCTTCTCCTGACATTCCACAGGCTTCTACTGGAATTCCAAAATCGTCGTCTAAACCGACTAAGTATACACCTCTAGAGCAACAAGTGGTGGAACTCAAGAGTAAATACCCAGACGTTCTTCTGATGATTGAAGTTGGTTATAAGTATCGATTTTTCGGTGAGGATGCTGAAGTTGCAGCTAGAGTATTAGGGTACAAGGTAGGTGTGGTTAAGCAGACTGAGACTGCAGCCATTAAGGCTCATGGATCGAACCGGTTGGGCCCATTTTGTCGTGGGTTATCGGCATTGTACACAAAGGCAACATTGGAGGCAGCGGAGGACTTGGGGGGAGGGGAAGAGGGGTGTGGAGCAGACAGTAATTTCCTGCTTTGTGTTGTTGAGAAGAGCATTTTAGGAGAAAATTCGAAGTATGGTCTGGAAAGTGGTTTTGATGTGAAAATTGGAATTATTGGGGTGGAAGTATCAACTGGTGATGTTGCTTATGGGGAGTTTGATGATAACTATTTGAGGAGTGGGCTTGAGGCTGCAATATTGAACTTGTCTCCGGCTGAGTTACTTCTCGGAGACCCGCTTTCCAAACAAACAGAGAAGttattaatagccTATGCTGGGCCTGCATCAAATGTTCGTGTGGAGCGTGCATCACGAGATTGCTTCACTGATGGAGGTGCTCTTGCTGAAGTTGTGTCTTCATATGAGAACACAGATGCTGACAGTCCATCAGATCCAATGCAAAGTAGTGAGTTGACTGAGCATGAAAGTCGTCAGTTGGCAATCAAGGAGATAATGAACATGCCAGATTTAGCTGTCCAAGCCTTGGCCTTAACCATTCGTCATTTGAAGCAATTTGGTTTTGAAAGGATTTTGTGTTCGGGGGCTTCTTTGAGGCCCTTATCAAGCAATATGGAAATGACCCTTTCAGCCAACGCACTTCAACAACTAGAGGTGATTTTACAAATGAGGGTTTCTGTTTGTTTTCAGGTTTTGAAAAACAACAGTGATGGATCTGAGACTGGCTCCTTACTGCAGATCATGAATCATACTCTAACTATATTTGGTTCCAGGCTTCTTAGACACTGGGTAACTCATCCATTGTgtgataaaaaaatgatttctgCTCGTCTTGATGCTGTGTCTGAGATTGCAGAATCCATGGGTTCTTGTAATGGTTTGAAGAATCTGGGATATGTTAAGGAAGATTCTGACATTGCAGTTGTGCAACCAGAGTTAGCATACGTGCTTTCTTTGGTTTTGACAACTCTGGGCCGGGCACCAGATATACAGCGTGGGATTACTAGAATTTCCCATCGGACTGCTACCCCATCCGAGTTTGTTGCAGTTATTCAAGCTATTTTGTCTGCTGGAAAACAGCTTCAACAACTTAATATGGGGGAGGAGAATAGTGATACATTGCACTCCAATCTgttgaaaaaattgattttgacTGCATCGTCTGCCAGTGTTATTGGTAGTGCAGTAAAAATGTTGTCATTTATAAACAAAGAATCTGCTGATCAGGGAGACATAACAAAGTTGATTATTGCATCTGATGGACAATTTCCTAAGGTCATTCAAGCCCGGAAGGTCTTTCAGATGGCTGTAGAACAATTAGATTCTTTGATTGGAATGTACCGCAAACAGCTTGGCAAGCACAGTTTGGAATTCTTGAGTGTTTCTGGGATAACTCATTTGATAGAGTTATCAACAGATGTAAGGGTACCTCTAAACTGGGTTAAGGTAAACAGTACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTGTTGACAGCATTGGACAAGTTATCACTGGCAAAAGAGGAGCTCACCATTGCTTGTCGAGCTGCTTGGGATAGCTTTCTGAGGGACTTTGGTAAAAATTGTGCTGAGTTCCAGGCTTGTGTTCAAGCTCTAGCTGCTTTAGATTGTCTACATTCTCTTGCCATTCTTTCAAGAAATAAGAGTTATGTCCGCCCAGTGTTTGTAGATGACAATGAACCTGTTCAGATACAAATTTGTTCGGGTCGACATCCGGTTTTGGAGACTACCTTACAAGACAATTTTGTGCCAAATGATACATACATGCATGCAGACAGAGAGTGTTGCCAGATTGTTACTGGACCCAATATGGGAGGAAAAAGTTGCTATATTCGTCAGGTCGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAACAAGACTACATGTCTTGGATGGGGTCTACACCCGGATGGGTGCTTCAGATAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTAAGCGAGGCTTCACATATACTCCAAAGCTGCACTGGACAGTCACTGGTTATCATTGATGAGCTTGGGAGAGGCACAAGTACTCATGATGGTATGGCTATTGCTTATGCAACTTTGCATTATTTGCTGGAGCAGAAAAAAAGCATGGTCCTTTTTGTCACACACTATCCTAAGATTGCCGACATTAGAACTGAATTCCCCCGCTCGGTGGCTGCTTATCATGTGTCATATCTGACATCACATGACGACACATGTAAGAACTCCAACTCAGACCATGAAGATGTCACTTACCTATACAAGCTTGTCCCTGGTGTTTCAGAgaagagttttggatttaaggtggCACAGCTTGCACAGCTACCTCCACGATGCATTAGCCGAGCCGCTGTTATGGCTTCCAGATTAGAAGCAGTAGTAAACAGTAGAATACAATGTAGATCAAGAAGCCATCTGCCGTTGGATGCACTGGTGATTGATCAAGAGCAACCGCTTGATAGTTCTTGTCAAGAGTTTGGTAGTGCATACAGAGAATTATTTTCAAACTTAAAAGCTGCATTAGACCATGATGACCTTACTAAAAGCTTCCAGTTTTTGGAGCAAGGTAAAAGCATTGCAAGGAAATTAATTAGCAGGTATTGTTACCTTTTATCTGAAAAATAG 3243 0.4221 MGKQKQQVISRFFAPKSNAPSTTDSSSSSSRPNPQTPPPKISATVSFSPSKRLLASQLTSPEKPPKLPKLSPHTQNPIPPLPDPSLHQRFLRKFLEPSPDIPQASTGIPKSSSKPTKYTPLEQQVVELKSKYPDVLLMIEVGYKYRFFGEDAEVAARVLGYKVGVVKQTETAAIKAHGSNRLGPFCRGLSALYTKATLEAAEDLGGGEEGCGADSNFLLCVVEKSILGENSKYGLESGFDVKIGIIGVEVSTGDVAYGEFDDNYLRSGLEAAILNLSPAELLLGDPLSKQTEKLLIAYAGPASNVRVERASRDCFTDGGALAEVVSSYENTDADSPSDPMQSSELTEHESRQLAIKEIMNMPDLAVQALALTIRHLKQFGFERILCSGASLRPLSSNMEMTLSANALQQLEVILQMRVSVCFQVLKNNSDGSETGSLLQIMNHTLTIFGSRLLRHWVTHPLCDKKMISARLDAVSEIAESMGSCNGLKNLGYVKEDSDIAVVQPELAYVLSLVLTTLGRAPDIQRGITRISHRTATPSEFVAVIQAILSAGKQLQQLNMGEENSDTLHSNLLKKLILTASSASVIGSAVKMLSFINKESADQGDITKLIIASDGQFPKVIQARKVFQMAVEQLDSLIGMYRKQLGKHSLEFLSVSGITHLIELSTDVRVPLNWVKVNSTKKTIRYHPPEVLTALDKLSLAKEELTIACRAAWDSFLRDFGKNCAEFQACVQALAALDCLHSLAILSRNKSYVRPVFVDDNEPVQIQICSGRHPVLETTLQDNFVPNDTYMHADRECCQIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSTRLHVLDGVYTRMGASDSIQQGRSTFLEELSEASHILQSCTGQSLVIIDELGRGTSTHDGMAIAYATLHYLLEQKKSMVLFVTHYPKIADIRTEFPRSVAAYHVSYLTSHDDTCKNSNSDHEDVTYLYKLVPGVSEKSFGFKVAQLAQLPPRCISRAAVMASRLEAVVNSRIQCRSRSHLPLDALVIDQEQPLDSSCQEFGSAYRELFSNLKAALDHDDLTKSFQFLEQGKSIARKLISRYCYLLSEK 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2564 1080 SMART DNAend 432 778 IPR007696 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 MobiDBLite consensus disorder prediction 1 116 - -
Sto10g2564 1080 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 751 997 IPR027417 -
Sto10g2564 1080 Pfam MutS domain I 119 160 IPR007695 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 100 1068 - -
Sto10g2564 1080 MobiDBLite consensus disorder prediction 329 349 - -
Sto10g2564 1080 Gene3D DNA repair protein MutS, domain I 87 160 IPR016151 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 PIRSF Msh6 103 159 IPR017261 GO:0006298|GO:0030983
Sto10g2564 1080 PIRSF Msh6 157 1046 IPR017261 GO:0006298|GO:0030983
Sto10g2564 1080 MobiDBLite consensus disorder prediction 1 31 - -
Sto10g2564 1080 Gene3D - 593 719 - -
Sto10g2564 1080 MobiDBLite consensus disorder prediction 40 57 - -
Sto10g2564 1080 SUPERFAMILY DNA repair protein MutS, domain III 424 748 IPR036187 -
Sto10g2564 1080 SMART mutATP5 795 994 IPR000432 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 Pfam MutS domain V 798 997 IPR000432 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 Gene3D - 751 1022 IPR027417 -
Sto10g2564 1080 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 100 1068 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Sto10g2564 1080 Gene3D DNA repair protein MutS, domain I 161 205 IPR016151 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 MobiDBLite consensus disorder prediction 65 84 - -
Sto10g2564 1080 Pfam MutS domain III 405 743 IPR007696 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 Gene3D MutS, connector domain 212 399 IPR036678 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 Pfam MutS domain II 216 312 IPR007860 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 Gene3D - 423 743 - -
Sto10g2564 1080 ProSitePatterns DNA mismatch repair proteins mutS family signature. 876 892 IPR000432 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 SUPERFAMILY DNA repair protein MutS, domain I 112 197 IPR016151 GO:0005524|GO:0006298|GO:0030983
Sto10g2564 1080 MobiDBLite consensus disorder prediction 329 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2564 Sto-Chr10 35945734 35955799 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2564 K08736 - gmx:100789883 1514.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2564 10 35945734 35955799 Sto10g2564 10 35945734 35955799 ECH