Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2549 ATGGGGAATTCATTTGGGTGCTCGGCGTCCGGCGAGAGGTTGGTATCGGCGGCGAGGGACGGCGATTTGGTCGAGGCCAAGATGCTTCTCGACTTTAACCCGTGTCTGGCCAAGTATTCTACCTTCGGTGGCCTCAATTCGCCTCTTCATTTCGCAGCCGCCAAGGGCCATAACGAGATTGTGGCGTTGTTGCTCGAGAACGGAGCTGATGTGAATACGAGAAATTATTGCGGGCAGACGGCCCTGATGCAAGCTTGTAGATATGGGCATTGGGAAGTTGTACAGACCCTTATGCTTTTCAGATGCAATGTTATGAGAGCAGATTATCTCAGTGGGAGGACAGCTCTTCACTTTGCAGCTGTGAATGGGCATGTAAGATGTATTAGACTTGTTGTGGCTGACTTTGTTCCAAGCACTCCTAATGAAACTAAACACTCTAGCACAGATGCTGAAAGAGGTGATGGCTCAAATGTGAGGAGCAAACCCGATCACAGTGCGCTGTCCAAGTTTGTAAATAAGACAGCTGATGGTGGTATTACTGCTCTTCATATGGCCGCTTTAAATGGGTATTTTGACTGTGTACAACTCCTACTTGATCTTAATGCAAATGTGACGGCTGTGACATTTCATTATGGAACATCAATGGATTTAATAGGGGCAGGAAGCACTCCATTGCATTATGCTGCTTGTGGGGGCAATTTAAAATGTTGTCAGATCCTCCTTGCAAGAGGTGCAAGCCGAATGGCTTTAAATTGCAATGGATGGCTTCCTCTTGATGTTGCTAGGATGTGGGGACGTCATTGGCTCGAACCATTACTGGCACCTAGTTCTGAGGCCACAATTCCGACATTCCCTCCTTCAAATTACTTGTCCTTGCCACTCATGAGTGTGCTTAACATAGCCAGGGAGTGCGGATTGCAGTCATCTACAGCCTCCTCTCATGAGACTGACTTTTGTGCCATCTGCCTTGAGAGGTCATGTTCAGTGGCTGCAGAAGGATGTGGCCATGGCCTTTGCGTAAGATGTGCCCTCTATCTTTGCTCAACAAGCAATGTTTCTTCTGAAATGCTTGACCCTCCTGGCTCCATCCCTTGCCCTCTTTGTAGACACGCAGTAATCTCTTTCGTCAAGTTACCCGGTTCCCGTGCAAAAGAGAATAAATTACACATGTCTCTTGGCCTATGCAACCCATGCATGCTACATCCATGTGACCCAGATCGACCATCTCTTTCTCAGACACCAGATGTTCAAAGAAATTGCGTAGCTTCTGTTCCCTCAGATATACTCTGTCCAGTCACTTGTAGTCCATTTCCATCTGTGACAATTCCACTGTGTACCTGCAACGATGGTCCCTGTCCTTCCTATGAACCCCGGGAATCCGAGACAGAAGATGAATCACGTTCGCAAGTGTCAACGGCGGATCAGGATAAAATGGAAGGGCCAAGACTTGATAAAACAACTTGTTCAAGCATGTTCTGGGGTAGAAGAAGTTGCAGCAGGGAACACCAGTGCAATTCAGAAATAAATGCTTGA 1533 0.4736 MGNSFGCSASGERLVSAARDGDLVEAKMLLDFNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNTRNYCGQTALMQACRYGHWEVVQTLMLFRCNVMRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSTPNETKHSSTDAERGDGSNVRSKPDHSALSKFVNKTADGGITALHMAALNGYFDCVQLLLDLNANVTAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDVARMWGRHWLEPLLAPSSEATIPTFPPSNYLSLPLMSVLNIARECGLQSSTASSHETDFCAICLERSCSVAAEGCGHGLCVRCALYLCSTSNVSSEMLDPPGSIPCPLCRHAVISFVKLPGSRAKENKLHMSLGLCNPCMLHPCDPDRPSLSQTPDVQRNCVASVPSDILCPVTCSPFPSVTIPLCTCNDGPCPSYEPRESETEDESRSQVSTADQDKMEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2549 510 MobiDBLite consensus disorder prediction 456 483 - -
Sto10g2549 510 SMART ring_2 319 368 IPR001841 -
Sto10g2549 510 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 392 IPR013083 -
Sto10g2549 510 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Sto10g2549 510 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Sto10g2549 510 PRINTS Ankyrin repeat signature 193 207 IPR002110 GO:0005515
Sto10g2549 510 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515
Sto10g2549 510 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Sto10g2549 510 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 510 - -
Sto10g2549 510 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Sto10g2549 510 Gene3D - 6 145 IPR036770 -
Sto10g2549 510 SMART ANK_2a 220 249 IPR002110 GO:0005515
Sto10g2549 510 SMART ANK_2a 44 73 IPR002110 GO:0005515
Sto10g2549 510 SMART ANK_2a 111 142 IPR002110 GO:0005515
Sto10g2549 510 SMART ANK_2a 77 106 IPR002110 GO:0005515
Sto10g2549 510 SMART ANK_2a 177 206 IPR002110 GO:0005515
Sto10g2549 510 SUPERFAMILY Ankyrin repeat 14 273 IPR036770 -
Sto10g2549 510 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Sto10g2549 510 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Sto10g2549 510 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Sto10g2549 510 SUPERFAMILY RING/U-box 315 375 - -
Sto10g2549 510 MobiDBLite consensus disorder prediction 145 159 - -
Sto10g2549 510 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Sto10g2549 510 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Sto10g2549 510 MobiDBLite consensus disorder prediction 456 486 - -
Sto10g2549 510 Gene3D - 146 270 IPR036770 -
Sto10g2549 510 MobiDBLite consensus disorder prediction 139 163 - -
Sto10g2549 510 Pfam Ankyrin repeats (many copies) 171 217 IPR002110 GO:0005515
Sto10g2549 510 Pfam Ankyrin repeats (many copies) 220 261 IPR002110 GO:0005515
Sto10g2549 510 PANTHER HOMEOBOX PROTEIN WARIAI 1 510 - -
Sto10g2549 510 Pfam Ankyrin repeats (many copies) 46 97 IPR002110 GO:0005515
Sto10g2549 510 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Sto10g2549 510 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2549 Sto-Chr10 35824380 35830830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2549 17 316 Miscellaneous Gene Families AT2G31820 28.571 2.34e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2549 K19044 - gmx:100785638 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2549 10 35824380 35830830 Sto10g2549 10 35824380 35830830 ECH