Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2538 ATGGCGGACGACGACTATAATGACTTGGATATGGGATATGAAGATGAACCACCAGAGCCTGAGATTGAAGAAGGTGCAGAGGAGGATGTAGAGAATAACAATGATGATTTAACTGGAGAACCTCTAGAAACTGAGGATAAAGAAGAACGAGAACCTGTAGAACGGCCACGGAAGACATCAAAATATATGACTAAATATGAGCGCGCCCGTATTTTGGGTACCCGTGCTCTTCAAATCAGTATGAATGCCCCTGTCATGGTTGAGTTGGAGGGGGAGACTGACCCTCTTGAGATTGCGATGAAGGAGCTTCGAGAGCGGAAGATACCCTTCACCATCCGTCGCTACTTGCCCGATGGAAGCTATGAAGACTGGGGAGTTGATGAACTGATTGTGGAAGACTCCTGGAAGAAGCAAGTGGGTGGCGACTGA 429 0.4755 MADDDYNDLDMGYEDEPPEPEIEEGAEEDVENNNDDLTGEPLETEDKEEREPVERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKKQVGGD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2538 142 SMART RNA_pol_Rpb6_2 57 110 IPR006110 GO:0003677|GO:0003899|GO:0006351
Sto10g2538 142 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 1 142 - -
Sto10g2538 142 MobiDBLite consensus disorder prediction 43 61 - -
Sto10g2538 142 MobiDBLite consensus disorder prediction 1 42 - -
Sto10g2538 142 ProSitePatterns RNA polymerases K / 14 to 18 Kd subunits signature. 64 78 IPR020708 GO:0003677|GO:0003899|GO:0006351
Sto10g2538 142 Hamap DNA-directed RNA polymerase subunit Rpo6 [rpo6]. 61 116 IPR006111 GO:0003677|GO:0003899|GO:0006351
Sto10g2538 142 PIRSF RpoK/RPB6 1 133 IPR006111 GO:0003677|GO:0003899|GO:0006351
Sto10g2538 142 PIRSF RPB6 1 133 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Sto10g2538 142 Pfam RNA polymerase Rpb6 59 110 IPR006110 GO:0003677|GO:0003899|GO:0006351
Sto10g2538 142 Gene3D - 3 133 IPR036161 GO:0003677|GO:0003899|GO:0006351
Sto10g2538 142 PANTHER DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B 1 142 - -
Sto10g2538 142 MobiDBLite consensus disorder prediction 1 61 - -
Sto10g2538 142 SUPERFAMILY RPB6/omega subunit-like 2 132 IPR036161 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2538 Sto-Chr10 35694040 35696788 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2538 K03014 - gmx:100794926 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2538 10 35694040 35696788 Sto10g2538 10 35694040 35696788 ECH