Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2516 ATGAATAAGGCTACGCATTCTCTGAGATCACTTCTCTTAGATTTCATACACAGATGCAATGACGTCAAGATCTTCAAGCAAATCCACGGACATCTTTTGACTTCCAATCTCGCTAGTGACCACTTCATTATTACTAAAGTCGCCAATTTTTTCGGTAAACATTTCAGTGAATTCGATTACGCTTGCAGTTTCTTGAAGCATTACGATTGGAGCTTGAGCTCTTTCCCTTGTAATTTGCTGATTGCTGGTTACGGTTCTGGTGAAACCCCCTGGGCTGCAATTTTAGTTTATAGATCGATTCTTAGAAATGGGTTTATGCCGGACGTCTATACTGTGCCAGCGGTTTTGAAATCTTGTGCGAAGTTTTCTGGGATTGGGGAGGTTAAGCAGTATCATTCTGTGGCGGTTAAGACGGGGCTATGGTGTGATATGTATGTGCAGAACAGTCTTGTACATGTGTATTCCGTTTGTGGTGATTGCATTGGTGCAAGTAAGGTGTTCGACGAAATGCTTGTGAGAGATGTGGTCTCTTGGACTGGATTGATATCTGGATATGTGAAAGCAGATTTGCTTAGTGAAGCTATTACATTGTTTTCGAGAATGGATGTGGAGCCTAATGTAGCAACATATGTTAGCTTACTTGTAACTTGTGGGAAATTGCTTAATATAAAATTGGGGAAGGCGATTCATGGGTTGATTTCGAAACGTCCTTGTGGAATGGAATTGGCCATAGGGAATGCTGTGATGgatatgtatatgaaatgcgAGTCTCTGTCTGATGCAAAGCAAATATTTGATGAGCTCCATGAGAAAGATTTTATATCTTGGACTACTATGATTGGTGGATTGGTACAATGTGAACGTGCCAAGGAAGCACTGGACTTGTTCTTTGAAATGCATAACTCAGGTTTTGAGCCTGACAAGATTATACTGACCTGTGCGCTTTCTGCTTGTGCTAGCCTTGGACTTCTTGATTATGGCATATGGGTCCATGAATACATTGATCGTAATCATATCAAATGGGATGTTCATTTAGGAACAACACTGATTGACATGTATGCAAAATGTGGTTGTATAGAGAAGGCGCAGAAGATTTTCAATGTGATGCCTTTTAGGAATGTTCGAACGTGGAATACTTTCTTAGGTGGTCTAGCAATAAATGGATATGGGCAAGAGGCACTGAAACAATTTGAAGTAATGATTGAATCTGGGACAAGGCCAAATGAGGTGACATTTCTTGCTGTTTTGACAGCTTGTTGCCATTCTGGCTTGGTTGATGAAGGTCGTAGTTACTTCCATCGTATGATAAATAAAAGCTACAATCTTTCTCCCGAATTAGAACACTACGGATGTATGGTTGATTTGCTCTGTAGGGCTGGATTGGTTGGTGAAGCTCTGGAGTTAATAAAGACAATGCCAATGGTGCCTGATGAGCATATCGTGGCGGCTCTTCTGAGAGCCTGTAATACCTATGGAAATGTTGGTTTTTCTCAAGAATTGTTAAAATCTCTTCATGACTTTGAACACCAAAATAGTGGCGTATACGTGCTTCTGTCGAATCTATATGCAACTCATGAGAGATGGGGTGAAGTAAGAAAATTGAGGAGGCTCATGAAGGAGAAAGGAGTAAGCAAGGCCCCAGGCTCAAGTCTTATAAGGATCGATGGTAAAAATCATGAATTTTTAGTTGGAGATCGAAGCCATCCACAAAATGAGGATATTCATGTACTATTGAACATCCTGACCAATCAGTATATCTCCATCTCTCCTTCTCCACAAAGTCTGCATCAAGGAATCGAGCAACAAATGCCCAGAGTTTGTACATGTCTTCAAAATTAG 1839 0.4035 MNKATHSLRSLLLDFIHRCNDVKIFKQIHGHLLTSNLASDHFIITKVANFFGKHFSEFDYACSFLKHYDWSLSSFPCNLLIAGYGSGETPWAAILVYRSILRNGFMPDVYTVPAVLKSCAKFSGIGEVKQYHSVAVKTGLWCDMYVQNSLVHVYSVCGDCIGASKVFDEMLVRDVVSWTGLISGYVKADLLSEAITLFSRMDVEPNVATYVSLLVTCGKLLNIKLGKAIHGLISKRPCGMELAIGNAVMDMYMKCESLSDAKQIFDELHEKDFISWTTMIGGLVQCERAKEALDLFFEMHNSGFEPDKIILTCALSACASLGLLDYGIWVHEYIDRNHIKWDVHLGTTLIDMYAKCGCIEKAQKIFNVMPFRNVRTWNTFLGGLAINGYGQEALKQFEVMIESGTRPNEVTFLAVLTACCHSGLVDEGRSYFHRMINKSYNLSPELEHYGCMVDLLCRAGLVGEALELIKTMPMVPDEHIVAALLRACNTYGNVGFSQELLKSLHDFEHQNSGVYVLLSNLYATHERWGEVRKLRRLMKEKGVSKAPGSSLIRIDGKNHEFLVGDRSHPQNEDIHVLLNILTNQYISISPSPQSLHQGIEQQMPRVCTCLQN 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2516 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Sto10g2516 612 PANTHER OS04G0488200 PROTEIN 5 190 - -
Sto10g2516 612 PANTHER OS04G0488200 PROTEIN 187 258 - -
Sto10g2516 612 PANTHER OS04G0488200 PROTEIN 257 585 - -
Sto10g2516 612 Pfam PPR repeat family 373 421 IPR002885 -
Sto10g2516 612 Gene3D Tetratricopeptide repeat domain 324 440 IPR011990 GO:0005515
Sto10g2516 612 Gene3D Tetratricopeptide repeat domain 441 560 IPR011990 GO:0005515
Sto10g2516 612 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 187 258 - -
Sto10g2516 612 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 190 - -
Sto10g2516 612 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 257 585 - -
Sto10g2516 612 Gene3D Tetratricopeptide repeat domain 224 323 IPR011990 GO:0005515
Sto10g2516 612 Gene3D Tetratricopeptide repeat domain 127 223 IPR011990 GO:0005515
Sto10g2516 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Sto10g2516 612 Pfam PPR repeat 176 201 IPR002885 -
Sto10g2516 612 Pfam PPR repeat 274 304 IPR002885 -
Sto10g2516 612 Pfam PPR repeat 448 472 IPR002885 -
Sto10g2516 612 Pfam PPR repeat 148 174 IPR002885 -
Sto10g2516 612 Pfam PPR repeat 347 372 IPR002885 -
Sto10g2516 612 Pfam PPR repeat 246 272 IPR002885 -
Sto10g2516 612 Pfam E motif 491 552 IPR046848 -
Sto10g2516 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 204 IPR002885 -
Sto10g2516 612 TIGRFAM PPR: pentatricopeptide repeat domain 176 202 IPR002885 -
Sto10g2516 612 TIGRFAM PPR: pentatricopeptide repeat domain 410 439 IPR002885 -
Sto10g2516 612 TIGRFAM PPR: pentatricopeptide repeat domain 274 307 IPR002885 -
Sto10g2516 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2516 Sto-Chr10 35423509 35433414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2516 43 584 Glycoside Hydrolase AT3G49170 34.545 1.01e-101 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2516 - - ccaj:109794299 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2516 10 35423509 35433414 Sto10g2516 10 35423509 35433414 ECH