Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2489 ATGATATTAATAGCTCTAGTAGGTCCCAGGGTAGTCCACCAATTTTCCTGTCGTTTGAATATTTTTAGAAAGTTTTGTGACCTTCCCCTTCCTGGTGACGGGTTTGAAAATGGATTTGATTGCGTTGAGGGGCCTTTGAAGAAGATGTGCAAGCTTTCTGATGTTGATTCCATTACGGATGAAAGTTTCAATACAAATGAGGATGAGAGCTATAACCAAACGCATTTTTCACTTAGAAAAGGGTTCATAGAAAATGCAAGGATAGATGCTAAAAGAGTTCTTGATATTCTTGGACAGGATGGTCCGGAGCTTGATGCCAGGTTGGTTTTAGATAAGTTGCATATAAGGCCGTCAGGGCTTCTACTGAGAGAAGTTCTCTTTGgaattttggaaaacataaattgTGAAAATAAGTCCAAGTGTGCAAAATtggcatataatttttttgtgtgGTGTAGTCAGCATGAGGCTTACCGGCACACTACAAACTCCTATCActtaatttttaagatatttGCAGAGTGTGAGGAATTTAGAGCAATGTGGAGGCTAGTTGATGAGATGATTGAGAAAGGAATTCCAGCTACAGCTCGTACTTTCAACATTCTAATTTGCACTTGTGGTGGGGCAGGCTTACCTAGGAAACTGATGGAGAGGTTTATAAAATCAAAGACATTTAACTTTAGGCCTTTGAAGCACTCTTACAATGCGATTCTCCATGGTCTTCTTGTTCTGAACCATTATAAGTTGATTGAGtgggtttataaaaaaatgttgctTGAGGGGCATTCCTCAGACATTTTAACTTATAATATAGTCATGTATGCCAAGTACAGGCTTGGGAAGGTACACCAGTTCAACAGACTGCTTAATGAGATGAGTAGCATTGGCCTTTCTCCAGATTCTCATACTTATAATATTCTTCTTCATATTCTTGGTAAAGGAGACAAACCACTTGCAGCTCTTAATCTCTTAAATCACATGAAAGAAACAGGTATAGAGCCAACTGTTCTTCATTTCACCACATTGATAGATGGACTCAGCAGAGCTGGGAATCTGGATGCTtgcaaatatttttttgatgaaATGATAAATAATGGATGCATGCCAGATGTAGTGGCATACACAGTAATGATCACAGGATATGTGATGGCTGGTGAGATTGAGAAAGCTCAGGCTATGTTTCAAGAGATGATTTCAAGAGAACAAATACCAAACGTGTACACATACAATTCCATGATTCGGGGATTATGTATGGCAGGAAAGTTTGATGAAGCATTGTCAATGCTGAAGGAAATGGAAACCAAAGGTTGTAATCCAAATTTTTATGTGTATAGTACCTTAGTGAATAATTTGCGGAATGCTGGAAAGCTTGCTGATGCTCATAAAGTAATAAGACAGATGATGGAGAAGGGGAAGTATGCCCCTCTAGTTTTTAGGCTCAGAAGGCACCGCCGGAGATAG 1464 0.3723 MILIALVGPRVVHQFSCRLNIFRKFCDLPLPGDGFENGFDCVEGPLKKMCKLSDVDSITDESFNTNEDESYNQTHFSLRKGFIENARIDAKRVLDILGQDGPELDARLVLDKLHIRPSGLLLREVLFGILENINCENKSKCAKLAYNFFVWCSQHEAYRHTTNSYHLIFKIFAECEEFRAMWRLVDEMIEKGIPATARTFNILICTCGGAGLPRKLMERFIKSKTFNFRPLKHSYNAILHGLLVLNHYKLIEWVYKKMLLEGHSSDILTYNIVMYAKYRLGKVHQFNRLLNEMSSIGLSPDSHTYNILLHILGKGDKPLAALNLLNHMKETGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMINNGCMPDVVAYTVMITGYVMAGEIEKAQAMFQEMISREQIPNVYTYNSMIRGLCMAGKFDEALSMLKEMETKGCNPNFYVYSTLVNNLRNAGKLADAHKVIRQMMEKGKYAPLVFRLRRHRRR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2489 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Sto10g2489 487 PANTHER OS10G0506000 PROTEIN 1 486 - -
Sto10g2489 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Sto10g2489 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Sto10g2489 487 Pfam PPR repeat family 370 418 IPR002885 -
Sto10g2489 487 Pfam PPR repeat family 266 312 IPR002885 -
Sto10g2489 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Sto10g2489 487 Pfam PPR repeat 234 262 IPR002885 -
Sto10g2489 487 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 486 - -
Sto10g2489 487 Pfam PPR repeat 436 468 IPR002885 -
Sto10g2489 487 Pfam PPR repeat 332 363 IPR002885 -
Sto10g2489 487 Gene3D Tetratricopeptide repeat domain 121 247 IPR011990 GO:0005515
Sto10g2489 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Sto10g2489 487 SUPERFAMILY TPR-like 371 473 IPR011990 GO:0005515
Sto10g2489 487 TIGRFAM PPR: pentatricopeptide repeat domain 443 472 IPR002885 -
Sto10g2489 487 TIGRFAM PPR: pentatricopeptide repeat domain 303 337 IPR002885 -
Sto10g2489 487 TIGRFAM PPR: pentatricopeptide repeat domain 373 406 IPR002885 -
Sto10g2489 487 TIGRFAM PPR: pentatricopeptide repeat domain 340 372 IPR002885 -
Sto10g2489 487 TIGRFAM PPR: pentatricopeptide repeat domain 408 441 IPR002885 -
Sto10g2489 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Sto10g2489 487 Gene3D Tetratricopeptide repeat domain 401 472 IPR011990 GO:0005515
Sto10g2489 487 Gene3D Tetratricopeptide repeat domain 248 400 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2489 Sto-Chr10 35167791 35169254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2489 164 478 Glycosyltransferase AT1G05670 26.101 2.40e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2489 - - ccaj:109794849 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2489 10 35167791 35169254 Sto10g2489 10 35167791 35169254 ECH