Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2430 atgtGGTTGTTCAGCAGAAAGGGACCTTCTGGgttctcagcttcttcaacagCTGAGGAAGTCACTCGAGGAATTGATGGCACTGGCCTCACTGCCATTATCACAGGCACTTACAGTCACTCAATGGAAATGTTCGCCTTTGGAATGAAGATGGATGAGCAGAGGGATTTCTCGCTTACTCGAGCAACTAGTGGCATTGGTGCTGAAACTGCTCGTGTACTTGCATTACGTGGTGTCCATGTAGTTATGGGGATTAGAGATATTAAAGCTGGTAAGAAGATCAAAGAGGAAATGATAAGAGATAACTCGAAAGGGAAAATAGATGTGATGGAACTGGACCTAAGCTCAATGGAATCAGTGAGAAAATTTGCCTCACAATTTAATTCTTGTGGTCTTCCTCTGAACATACTAATTAATAATGCAGGAATTATGGCGACACCCTTCAAGCTTTCCAAAGACAATATAGAACTACAATTTGCAACAAAccacattgGTCATTTTCTTTTGACAAACTTATTGTTGGACACAATGAAACAAACTTCTATTGAACATAGAAAAGAGGGAAGGATTGTTAATGTCTCATCAAGACGCCATCGATTCTCGTATCCTGAAGGGATTCAATTTGCTAAAATCAATGATAAATCAGGGTACAACAGCTTGTCTGCATATGGCCAATCGAAGCTTGCTAATGTTTTGCATGCTAATGAGCTTGCAAGACTTCTAAAGGATGAGGGGTTGGAGATAACTGCAAACTCACTTCACCCAGGAGCAATTGCAACTAATCTATTCCGTCATCACAACTTGATTGATGTCACCAGAGTACCAAAAGGCGAAAACGCTATTGTCAAGGCCGAAGCACCTACCTTTGGTCACCCAATTCAAAAAGTAACTAAACCAGTGGAAGCACCACCAAAATATTGGCCAGTCCCTAAAAGCCCatcaccgccgccgccgccacacGAGGCTTCTTGTGCATGGGTTCTACTCGCCTGA 993 0.3958 MWLFSRKGPSGFSASSTAEEVTRGIDGTGLTAIITGTYSHSMEMFAFGMKMDEQRDFSLTRATSGIGAETARVLALRGVHVVMGIRDIKAGKKIKEEMIRDNSKGKIDVMELDLSSMESVRKFASQFNSCGLPLNILINNAGIMATPFKLSKDNIELQFATNHIGHFLLTNLLLDTMKQTSIEHRKEGRIVNVSSRRHRFSYPEGIQFAKINDKSGYNSLSAYGQSKLANVLHANELARLLKDEGLEITANSLHPGAIATNLFRHHNLIDVTRVPKGENAIVKAEAPTFGHPIQKVTKPVEAPPKYWPVPKSPSPPPPPHEASCAWVLLA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2430 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 143 IPR002347 -
Sto10g2430 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 188 196 IPR002347 -
Sto10g2430 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 223 242 IPR002347 -
Sto10g2430 330 PANTHER RETINOL DEHYDROGENASE 2 277 - -
Sto10g2430 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 62 272 IPR036291 -
Sto10g2430 330 Gene3D - 26 300 - -
Sto10g2430 330 Pfam short chain dehydrogenase 60 265 IPR002347 -
Sto10g2430 330 PRINTS Glucose/ribitol dehydrogenase family signature 56 73 IPR002347 -
Sto10g2430 330 PRINTS Glucose/ribitol dehydrogenase family signature 132 143 IPR002347 -
Sto10g2430 330 PRINTS Glucose/ribitol dehydrogenase family signature 182 198 IPR002347 -
Sto10g2430 330 PRINTS Glucose/ribitol dehydrogenase family signature 246 263 IPR002347 -
Sto10g2430 330 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED 2 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2430 Sto-Chr10 34598361 34603745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2430 59 272 Acyl Lipid Metabolism Gene Families AT1G63380 28.509 2.17e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2430 - - gmx:100775556 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2430 10 34598361 34603745 Sto10g2430 10 34598361 34603745 ECH