Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2420 ATGGCTCCTCCCAGAGgtcgtggtggtggtgggttcAGAGGCGGCAGAGGCGATGGCGGACgtggaggaagaggaggagggagAGGTTTTGGAGGAAGAGGATCAGACATGAAAGCTCGTGGTGGCGGACGCGGAGGAGGTAGGGGTTTTGGTCGCGGAGGAGGTAGGGGTGGTGGTCGCGGAGGAGGCAGGGGTGGAATGAAAGGAGGGAGCAAGGTTATCGTTGAGCCTCATAGACATGAAGGAATATTCATTGCCAAGGGTAAAGAAGATGCCCTTGTCACTAAGAATTTAGTTCCTGGTGAAGCTGTTTACAACGAGAAAAGGATCACCGTGCagAATGAGGACGGTTCCAAAGTTGAGTATAGGGTGTGGAACCCTTTCCGCTCCAAGTTGGCTGCTGCTATTCTTGGTGGAGTTGACAACATATGGATTAAACCTGGTGCCCGTGTTCTCTACCTAGGAGCTGCTTCTGGCACTACTGTCTCTCATGTTTCTGACATTGTTGGCCCAACTGGAGTCGTCTATGCAGTTGAGTTTTCACACAGGAGTGGCCGTGACTTGGTCAACATGGCCAAGAAGCGTACTAATGTTATACCCATTATTGAAGATGCTAGGCATCCTGCCAAATACAGGATGTTGGTTGGAATGGTAGATGTAATATTTTCTGATGTTGCTCAGCCTGATCAGGCAAGGATTCTTGGGCTGAATGCTTCATATTATTTGAAAGCAGGAGGTCACTTTGTTATTTCAATCAAGGCAAACTGCATAGACTCCACAGTCCCAGCGACAGCCGTGTTTGCGAGTGAAGTTAACAAGCTTAGGGCAGATCAATTTAAGCCTTCGGAGCAAGTGACCCTTGAGCCATATGAGCGAGACCATGCTTGTGTGGTTGGTGCATACAGAGTGCCCAAGAAGAAAAAGGACGAGTAG 933 0.4673 MAPPRGRGGGGFRGGRGDGGRGGRGGGRGFGGRGSDMKARGGGRGGGRGFGRGGGRGGGRGGGRGGMKGGSKVIVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGSKVEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPATAVFASEVNKLRADQFKPSEQVTLEPYERDHACVVGAYRVPKKKKDE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2420 310 MobiDBLite consensus disorder prediction 1 72 - -
Sto10g2420 310 ProSitePatterns Fibrillarin signature. 173 187 IPR020813 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 6 309 - -
Sto10g2420 310 SMART Fibrillarin_2 75 303 IPR000692 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 89 302 IPR000692 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 PRINTS Fibrillarin signature 93 112 IPR000692 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 PRINTS Fibrillarin signature 121 140 IPR000692 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 PRINTS Fibrillarin signature 148 169 IPR000692 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 PRINTS Fibrillarin signature 173 190 IPR000692 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 PRINTS Fibrillarin signature 198 227 IPR000692 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 PRINTS Fibrillarin signature 228 257 IPR000692 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 PRINTS Fibrillarin signature 280 301 IPR000692 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 6 309 - -
Sto10g2420 310 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 73 300 IPR029063 -
Sto10g2420 310 Gene3D Vaccinia Virus protein VP39 126 303 IPR029063 -
Sto10g2420 310 Gene3D Phosphorylase Kinase; domain 1 70 125 - -
Sto10g2420 310 PIRSF Nop17p 38 305 IPR000692 GO:0003723|GO:0006364|GO:0008168
Sto10g2420 310 Pfam Fibrillarin 75 302 IPR000692 GO:0003723|GO:0006364|GO:0008168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2420 K14563 - gmx:100789137 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2420 10 34456497 34459111 Sto10g2420 10 34456497 34459111 ECH