Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2265 ATGAAAGctatttcatttctttctcgTCAATTTTCTGGATTACAAGTCTTCGTATCATCAGCCCGAAAATCCATAGATTTTCCTGCAAATCTGAATCTTGTTGATGAGCTGCTTGGCAAAGTATTAGATCAACGCCCTGATATCAAAACCCTAAAGGTAGTGCACTCTAAGGTTTTTTATCACAATCTTCATTCAGACCCATCTCTGGGAATCAAACTAATGAGAGCTTATGCTGCTTGTGGTGAAGTTATCTTGACACGTAAGGTGTTCGATGAAAGTCCTGAGAAGAATGTCATTTTCTATAATGTAATGATAAGGAGCTATGTAAACAACCATTTGTACGACGATTCACTACTTTTTTTCAAGACCATGGTTAATGGAGGATTCAGTGGAGATAATTATACATACCCTTGCGTCCTAAAGGCTTGTTCTTGCTCTGAGAATATAAGATTTGGGTTACAGCTTCATGGGGCTGTGTTAAAGGTTGGACTTGACTACAATTTGTTTGTTGGTAATGGTCTTATTGCCATGTATGGGAAATGTGGTTACTTATTTGAGGCACGGCGAGTTCTTGATGAAATGCCAAGTAGAGATGCTGTTTCTTGGAATGCAATGGTTGCAGGGTATGCTCAAAATGGACGGTTTGATGAGGCATTGGAGATTTGCCAAGAAATGCAGGCATCAAGACAACAACCTGATGCCGGTACATTGGCTAGCCTCATGCCAGCTATAACTAACACATCATCTGACAATGTTTCATATGTTAGGGACATGTTCATGAATTTGGAGAAGAAGACTCTGGTTTCATGGAATGTGATGATAGCTATGTTTGTCAAAAATTCGATGCCTAGCAAAGCTGTTGAGTTATATATGCAAATGGAAGAGAGCAGGTTGGAATCTGATGCAATCACTTTGGCTAATGTTCTTTTAGCTTGTGGGGACCTTTCAGCTTTGTTGCTAGGAAGGAAAATTCATGAAGATGTTGAGAGAAAGAAATTATGCCCAAATGTAGTTTTGGAGAACGCATTAATAGACATGTATGGTAGGTGTGGATGTCTAGAAGATGCAAGGAAAGTGTTTAACAGAATGAAGTCACGTGATGTTGCATCATGGACATCATTGATTACTGCTTATGGTATGACCGGGCAAGGTCGCAATGCTGTGATACTCTTCAAAGAAATGCAAGATTCAGGTCTGAGTCCTGATTCGATTGCTTTTGTTGCAATTATGTCAGCTTGCAGCCATTCAGGATTACTGGATGAAGGGAAACTCTACTTCCAACAGATGACAAATGATTATAAAATAACTCCAAGAATTGAACACTTCTCTTGTATGGTTGATCTCTTGGGACGTGCCGGGCAAGTAGCTGAGGcttataatttcatcaaacagATGCCAATTGAGCCCAATCAAAATGTTTGGGGGGCTCTGCTCAGTGCTTGCCGGGTGTATTCTAACATGGATATCGGTCTTTTAGCAGCCGATAAACTTTTTGAGTTGGTTCCTGAGAATTCAGGTTACTATGTTTTGTTGTCTAATATTTATGCTAAGGCTGGTAGATGGCAAGAAGTGGCAGCTGTTCGATCACTAATGAAAAGAAGACGACTTAAGAAAATGCCTGGTATTAGCAATGTGGAGCTGAATAATCGTATTTACACCTTTCTTGCTGGTGATAGATCGCACCCACAGTCACAGAAAATATATGAAGAGTTAGATGTGTTGGTGGGGAAGATGAAAGAGTTAGGTTATGTCCCTGAGACTGATTCTGCTCTTCATGATGTGGAGGAAGAGGATAAGGAATACCATTTATCTGTACACAGTGAAAAGTTAGCTATTGTGTTTGCTATTTTGAATACCCAACCTGGGACTCCAATCAGAATCACCAAGAACCTTCGTGTTTGTGGAGATTGCCATATTGCTGCCAAGCTCATCTCCAAGATAGTAGAACGTGAAATTGTTGTTAGGGACACTAACCGATTCCACCATTTTAAGGATGGTGCATGCTCTTGTGGAGATTATTGGTAA 2025 0.3956 MKAISFLSRQFSGLQVFVSSARKSIDFPANLNLVDELLGKVLDQRPDIKTLKVVHSKVFYHNLHSDPSLGIKLMRAYAACGEVILTRKVFDESPEKNVIFYNVMIRSYVNNHLYDDSLLFFKTMVNGGFSGDNYTYPCVLKACSCSENIRFGLQLHGAVLKVGLDYNLFVGNGLIAMYGKCGYLFEARRVLDEMPSRDAVSWNAMVAGYAQNGRFDEALEICQEMQASRQQPDAGTLASLMPAITNTSSDNVSYVRDMFMNLEKKTLVSWNVMIAMFVKNSMPSKAVELYMQMEESRLESDAITLANVLLACGDLSALLLGRKIHEDVERKKLCPNVVLENALIDMYGRCGCLEDARKVFNRMKSRDVASWTSLITAYGMTGQGRNAVILFKEMQDSGLSPDSIAFVAIMSACSHSGLLDEGKLYFQQMTNDYKITPRIEHFSCMVDLLGRAGQVAEAYNFIKQMPIEPNQNVWGALLSACRVYSNMDIGLLAADKLFELVPENSGYYVLLSNIYAKAGRWQEVAAVRSLMKRRRLKKMPGISNVELNNRIYTFLAGDRSHPQSQKIYEELDVLVGKMKELGYVPETDSALHDVEEEDKEYHLSVHSEKLAIVFAILNTQPGTPIRITKNLRVCGDCHIAAKLISKIVEREIVVRDTNRFHHFKDGACSCGDYW 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2265 674 Pfam E+ motif 551 576 IPR046849 -
Sto10g2265 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Sto10g2265 674 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 17 667 - -
Sto10g2265 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Sto10g2265 674 Pfam E motif 484 546 IPR046848 -
Sto10g2265 674 SUPERFAMILY TPR-like 197 523 IPR011990 GO:0005515
Sto10g2265 674 Gene3D Tetratricopeptide repeat domain 30 149 IPR011990 GO:0005515
Sto10g2265 674 Gene3D Tetratricopeptide repeat domain 385 586 IPR011990 GO:0005515
Sto10g2265 674 Gene3D Tetratricopeptide repeat domain 317 368 IPR011990 GO:0005515
Sto10g2265 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Sto10g2265 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Sto10g2265 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 366 IPR002885 -
Sto10g2265 674 Pfam DYW family of nucleic acid deaminases 582 674 IPR032867 GO:0008270
Sto10g2265 674 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Sto10g2265 674 TIGRFAM PPR: pentatricopeptide repeat domain 370 403 IPR002885 -
Sto10g2265 674 TIGRFAM PPR: pentatricopeptide repeat domain 101 132 IPR002885 -
Sto10g2265 674 TIGRFAM PPR: pentatricopeptide repeat domain 341 368 IPR002885 -
Sto10g2265 674 TIGRFAM PPR: pentatricopeptide repeat domain 268 301 IPR002885 -
Sto10g2265 674 Pfam PPR repeat family 266 307 IPR002885 -
Sto10g2265 674 Pfam PPR repeat family 367 414 IPR002885 -
Sto10g2265 674 Pfam PPR repeat family 96 143 IPR002885 -
Sto10g2265 674 Gene3D Tetratricopeptide repeat domain 249 316 IPR011990 GO:0005515
Sto10g2265 674 Gene3D Tetratricopeptide repeat domain 150 248 IPR011990 GO:0005515
Sto10g2265 674 Pfam PPR repeat 172 197 IPR002885 -
Sto10g2265 674 Pfam PPR repeat 200 227 IPR002885 -
Sto10g2265 674 Pfam PPR repeat 441 465 IPR002885 -
Sto10g2265 674 Pfam Pentatricopeptide repeat domain 323 366 IPR002885 -
Sto10g2265 674 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 17 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2265 Sto-Chr10 32746699 32748723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2265 88 674 Glycoside Hydrolase AT3G49170 39.110 1.24e-147 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2265 - - gmx:100787841 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2265 10 32746699 32748723 Sto10g2265 10 32746699 32748723 ECH