Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0383 ATGGGGAAATCCAAACAATACTTCCTCTTGAAGACGGAGCCATCAGAGTGGTCATGGGATGACCAAGCCTCCAATGGAGGCATAACCAAATGGGACGGCGTCAAGAACAAGCAAGCCCAGAAATGCCTCAAGTCCATGACCCTTCACGATCTCTGCTTCTTCTACCACTCCGGCGCCAAGGCCCGCCGCGTCGTCGGCGTCGTCACCGTCGTCCGCGAGTGGTACGTCGAGGACGACGACGGCGCCGTTGATGTGAAGGCGGTAGGGGAAATGAGGAGGCCGGTGGATTTGAAGGAGATGAAAGGAGACGAAGGGTTGAAGAATTTCGCGCTGTTCAAGCAGCCTAGGCTCTCGGTTGTTCCGCTTTCCGAGAGTATCTGGAAAAGGATTTGTGATTTGGGAGGTGGCTACGAAGGGGACGGTGAAGATGGTGGTGGTcgtgaggaggaagaggagggcGAAACTAGTTTGGCTGATGGGCCAATGGCTATGTCTTCTTCAAAATTGATATTGCTGCAAATGCAAACCCTAATTTCTGCGAGGCCTCGTTTTGCACAAGTTCTCACCACTTCATGGCTCAGAACCTTGAGCGTCCGAGCTTTCTCATCATCTGATTATGGCGACCAGTCACGCGGTGGCCTCCCGCGCTTCTACTCCGAAATTCTTCCTCCTTCCAAGGCAATTTCTGCTCTTCTCGGTAATGTTGTGCGTGTACAAGGTGATGAGTTCTGGCACATGACAAAAGTATTAAGATTGAGCGCCAATGATAGGGTAGAGCTCTTCAATGGGAAGGGAGGCTTAGTAGAAGGTTTCATAGAGAATGTTGATCGGACAGGAGTTGATTTTGTTGCATTGAATGATCCGAAGTTAATACCTCCACAAAATACTCAATGGCATGTATTTGCAGGCTTCGGTACTCTGAAGGGCGGTCGTGCCGACTGGCTAGTAGAGAAGTGCACAGAACTTGGAGCCAGTAGTGTAACTCCTCTATTGTCTGAACGCTGTCCATCAATCTCAGAAAATCGAGTGGACAGATTGGAACGTGTCATTTTAGCAGCATCCAAACAATGTCAACGGCTGCATGAAATGGTCCTGAAACCTCCAATAGAGATTGATGACCTTTCGCATCTTATTGCACAATCAAAGCTTGCGCTCCTTGCGGCGGCCAAGGCAGCTCCTGTACTTGGTGCGTTGACATCATCATCACAGGAAACTAGCGGCTTAATCATAATTGGACCAGAAGGAGACTTCAGTGAGAAGGAAGTCAGTATGATGATAGAGGCGGGTGCTACTGCTGTTGGTCTAGGGCCACATCGTCTACGGGTTGAAACTGCAACAATAGCACTGTTGGCGACTGTCATGTTGTGGTCCGACTCTCAGAGAAGTTCTGTCTGTTGA 1398 0.4893 MGKSKQYFLLKTEPSEWSWDDQASNGGITKWDGVKNKQAQKCLKSMTLHDLCFFYHSGAKARRVVGVVTVVREWYVEDDDGAVDVKAVGEMRRPVDLKEMKGDEGLKNFALFKQPRLSVVPLSESIWKRICDLGGGYEGDGEDGGGREEEEEGETSLADGPMAMSSSKLILLQMQTLISARPRFAQVLTTSWLRTLSVRAFSSSDYGDQSRGGLPRFYSEILPPSKAISALLGNVVRVQGDEFWHMTKVLRLSANDRVELFNGKGGLVEGFIENVDRTGVDFVALNDPKLIPPQNTQWHVFAGFGTLKGGRADWLVEKCTELGASSVTPLLSERCPSISENRVDRLERVILAASKQCQRLHEMVLKPPIEIDDLSHLIAQSKLALLAAAKAAPVLGALTSSSQETSGLIIIGPEGDFSEKEVSMMIEAGATAVGLGPHRLRVETATIALLATVMLWSDSQRSSVC 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0383 465 CDD RsmE-like 304 451 IPR046886 -
Sto10g0383 465 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 214 462 IPR006700 GO:0006364|GO:0008168
Sto10g0383 465 MobiDBLite consensus disorder prediction 138 159 - -
Sto10g0383 465 Pfam RNA methyltransferase PUA domain 239 283 IPR046887 -
Sto10g0383 465 SUPERFAMILY PUA domain-like 230 283 IPR015947 -
Sto10g0383 465 SUPERFAMILY PUA domain-like 5 135 IPR015947 -
Sto10g0383 465 SUPERFAMILY alpha/beta knot 296 457 IPR029028 -
Sto10g0383 465 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 234 454 IPR006700 GO:0006364|GO:0008168
Sto10g0383 465 Gene3D ph1033 like domains 4 144 - -
Sto10g0383 465 Pfam EVE domain 6 132 IPR002740 -
Sto10g0383 465 Gene3D - 214 463 IPR029026 -
Sto10g0383 465 Pfam RNA methyltransferase domain 299 453 IPR046886 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0383 K09761 - gmx:100777253 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0383 10 3093202 3098514 Sto10g0383 10 3093202 3098514 ECH