Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0358 ATGACATCTGTCCTCCAGCCGCCGCCGCCGGCCGGCCGAGAACTATCGAATCCTCCCTCCGACGGTATCTCGAACCTTCGGTTCTCTAACCACAGTGATCACCTGCTTGTCTCCTCATGGGATAAGAGTGTGCGGTTGTATGATGCAAGTGAAAACGTGCTCCGAGGAGAGTTCTTGCACGGTGGACCTGTGCTTGACTGTTGCTTCCACGATGATTCCTCGGGTTTCAGCGCCGGCGCCGATAATACAGTGAGGCGGCTCGTTTTCAGCTCTAATAAAGAGGATATTCTGGGAAGGCATGATGCACCTGTTCGTTGTGTCGAGTATTCCTATGCAGCAGGGCAATTAATCACTGGTAGTTGGGACAAAACTCTAAAATGTTGGGACCCTAGAGGTGCAAGTGGGCAAGATCGCACTCTTGTTGGTACATATCCACAACCTGAGCGTGTTTACTCTCTTTCTCTTGTTGGAAATCGTCTAGTTGTAGCAACAGCAGGAAGACATGTCAATGTTTATGATTTGAGGAATATGTCTCAACCTGAGCAGCGAAGGGAATCTTCATTAAAATATCAAACCAGATGTGTTCGCTGTTACCCAAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTAGCAATGGAATATTTTGATCTATCTGAGACTAGCCAAGCAAAAAAATATGCTTTTAAGTGCCACAGAAAATCAGAAGCTGGAAGGGACATTGTCTTTCCTGTAAATGTCATTGCTTTCCACCCTATATATGGCACATTTGCCACAGGAGGTTGTGATGGTTATGTCAATGTATGGGATGGAAACAACAAGAAGAGGCTTTACCAGTACTCGAAATATCCATCTAGCATTGCTGCACTTTCATTTAGCAGAGATGGACGCCTCCTGGCCGTGGCGTCAAGTTACACATTTGAAGAAGGGGATAAACCTCATGAACCAGATGCTATTTACGTGCGCAGTGTAAATGAGATAGAGGTCAAGCCAAAGCCCAAAGTTTATCCTAATCCTCCGTCTTGA 1032 0.4622 MTSVLQPPPPAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASENVLRGEFLHGGPVLDCCFHDDSSGFSAGADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQDRTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEYFDLSETSQAKKYAFKCHRKSEAGRDIVFPVNVIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPSSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIYVRSVNEIEVKPKPKVYPNPPS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0358 343 PANTHER MRNA EXPORT FACTOR AND BUB3 9 338 - -
Sto10g0358 343 Pfam WD domain, G-beta repeat 231 272 IPR001680 GO:0005515
Sto10g0358 343 Pfam WD domain, G-beta repeat 97 129 IPR001680 GO:0005515
Sto10g0358 343 Pfam WD domain, G-beta repeat 21 48 IPR001680 GO:0005515
Sto10g0358 343 Gene3D - 8 337 IPR015943 GO:0005515
Sto10g0358 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 281 IPR001680 GO:0005515
Sto10g0358 343 SUPERFAMILY WD40 repeat-like 18 306 IPR036322 GO:0005515
Sto10g0358 343 MobiDBLite consensus disorder prediction 1 21 - -
Sto10g0358 343 PRINTS G protein beta WD-40 repeat signature 35 49 IPR020472 -
Sto10g0358 343 PRINTS G protein beta WD-40 repeat signature 116 130 IPR020472 -
Sto10g0358 343 PRINTS G protein beta WD-40 repeat signature 259 273 IPR020472 -
Sto10g0358 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 97 129 IPR001680 GO:0005515
Sto10g0358 343 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 9 338 - -
Sto10g0358 343 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 97 129 - -
Sto10g0358 343 SMART WD40_4 137 173 IPR001680 GO:0005515
Sto10g0358 343 SMART WD40_4 224 272 IPR001680 GO:0005515
Sto10g0358 343 SMART WD40_4 51 88 IPR001680 GO:0005515
Sto10g0358 343 SMART WD40_4 90 129 IPR001680 GO:0005515
Sto10g0358 343 SMART WD40_4 275 313 IPR001680 GO:0005515
Sto10g0358 343 SMART WD40_4 8 48 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0358 Sto-Chr10 2855793 2860109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0358 100 306 Miscellaneous Gene Families AT5G08390 23.333 7.72e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0358 K02180 - jre:108979744 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0358 10 2855793 2860109 Sto10g0358 10 2855793 2860109 ECH