Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0343 ATGGCTATCATGTGTTCGGGACTCTTCTCCACCTTCCTCACCGGCGATACGGCGTCGTCGTTTGCGGCCGCTCCTCCCAGCAGGTTCTCTAATTTGCGGATGGTGCGAAGTGTGACCTACGCCACAGTTTCAGAACCTGCCAGTGCGACGGGGAAGAAGCCTCGGGGTATAATGAAGCCTCGCAGAATCTCCCCCGAAATGCAAGCCCTCGTTGGCCTTCCTGAGATTTCCAGAACTCAAGCTCTCAAGCACATTTGGGCTTACATTAAGGACAACAATCTTCAGGACCCTGAGAACAAGAAGATTATCATCTGTGATGAGAAGCTGAAGAAGATATTTGCAGGGAAAGATCAAATTGGGTTTCTTGAGATTGCTGGGTTGATCAGCCCTCACTTCCTTTAA 402 0.5025 MAIMCSGLFSTFLTGDTASSFAAAPPSRFSNLRMVRSVTYATVSEPASATGKKPRGIMKPRRISPEMQALVGLPEISRTQALKHIWAYIKDNNLQDPENKKIIICDEKLKKIFAGKDQIGFLEIAGLISPHFL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0343 133 SMART swib_2 57 133 IPR019835 -
Sto10g0343 133 SUPERFAMILY SWIB/MDM2 domain 52 132 IPR036885 -
Sto10g0343 133 CDD SWIB-MDM2_like 61 132 - -
Sto10g0343 133 PANTHER PROTEIN TRI1-LIKE 5 133 - -
Sto10g0343 133 Pfam SWIB/MDM2 domain 59 132 IPR003121 -
Sto10g0343 133 Gene3D SWIB/MDM2 domain 51 133 IPR036885 -
Sto10g0343 133 ProSiteProfiles SWIB/MDM2 domain profile. 56 133 IPR003121 -
Sto10g0343 133 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 5 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0343 Sto-Chr10 2749323 2750768 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Sto10g0343 SWIB 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0343 - - twl:120001755 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0343 10 2749323 2750768 Sto10g0343 10 2749323 2750768 ECH