Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0307 ATGCCTAGGCTGCGAATTCGAGAGGTGAGAGACGACTATATGAAGTTCGAGCTGCGTGACACCGACGTCAGCATCGCCAACGCCCTCAGGCGCATCATGATCGCCGAGGATCTCTATAGCTCTGACCCTACCGTCGTTCCCGTCGAGTTATTTGAATCCGTTGCCTTGGATCCCTCTGACGCTGCCTCGAGGCCTGACACTAGGGGGATTATGATAGTAAAGCTGCGGCGTGGGCAGGAACTGAGACTGAGGGCAATAGCTAGAAAGGGAATTGGGAAGGATCATGCAAAATGGTCACCAGCAGCAACTGTAACTTTTATGTATGAGCCAGATATTCATATCAATAATGAATTAATGGAAACATTGACACTTGAGCAGAAAACTGAATGGGTTGAAAGTTCTCCTACCCCTGTGTTTGAAATCGATCCTGCTACCAAACAGGTTGTGGTACGTGACCATGAGGCATACACCTTTGACGGAGAAGTAATCAAGAAAGCAGAAGCTATGGGCCTCCCTGGGCTTGTTGAAGTCAGTGATAAACCGGATAGTTTCATATTTACAATTGAAACCACTGGTGCAGTCAAGGCTAATCAGTTAGTAGTGAATGCCATAGAAGTCCTCAAAAGTAAGCTGGATGCAGTGCGACTATCAGAAGATACAGTTGAAGCAGATGACCAATTTGGTGAATTAGGTGCACATATGCGAGGAGGATGA 714 0.4692 MPRLRIREVRDDYMKFELRDTDVSIANALRRIMIAEDLYSSDPTVVPVELFESVALDPSDAASRPDTRGIMIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINNELMETLTLEQKTEWVESSPTPVFEIDPATKQVVVRDHEAYTFDGEVIKKAEAMGLPGLVEVSDKPDSFIFTIETTGAVKANQLVVNAIEVLKSKLDAVRLSEDTVEADDQFGELGAHMRGG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0307 237 Gene3D - 2 36 IPR036603 GO:0006351|GO:0046983
Sto10g0307 237 Pfam RNA polymerase Rpb3/RpoA insert domain 28 99 IPR011262 GO:0003899|GO:0006351|GO:0046983
Sto10g0307 237 PANTHER DNA-DIRECTED RNA POLYMERASE 36 234 - -
Sto10g0307 237 PANTHER DNA-DIRECTED RNA POLYMERASE 2 36 - -
Sto10g0307 237 SUPERFAMILY RBP11-like subunits of RNA polymerase 2 218 IPR036603 GO:0006351|GO:0046983
Sto10g0307 237 PANTHER BNAA09G08480D PROTEIN 36 234 - -
Sto10g0307 237 PANTHER BNAA09G08480D PROTEIN 2 36 - -
Sto10g0307 237 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 57 100 IPR036643 -
Sto10g0307 237 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 15 211 IPR011263 GO:0003899|GO:0006351
Sto10g0307 237 Gene3D - 99 211 IPR036603 GO:0006351|GO:0046983
Sto10g0307 237 Gene3D - 53 98 IPR036643 -
Sto10g0307 237 SMART rpoldneu2 13 217 IPR011263 GO:0003899|GO:0006351
Sto10g0307 237 Gene3D - 109 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0307 Sto-Chr10 2432720 2435031 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0307 K03011 - gmx:100779047 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0307 10 2432720 2435031 Sto10g0307 10 2432720 2435031 ECH