Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0243 ATGGCGATTTCTCCGCACCTTTGCACTATCCCTACAACTCGCAACGATCTCGCCTTGCCCGACAAGTTCACTAGATTCGGTACTTTCCGGTGCCGGAAACTTCCTCTCTCTGTCAGATGCTCCGCCGATTCTTCTTCGTCGTCTACCGCTTCCGTGGAATCCGATTTTGATGCCAAGCTGTTCCGGAAGAATCTAACCAGGAGTAAGAACTACAATCGGAAGGGGTTTGGGCACAAGGAAGAGACCCTTGAGCTTATGAATCGCGAGTACACCAGTGACATCATTAAGACTTTGAAGGAAAATGGATATGAGTATACATGGGGTAACACTACAGTAAGGCTTGCTGAAGCCTTTGGCTTCTGCTGGGGAGTTGAAAGGGCTGTTCAAATTGCTTACGAGGCTAGAAAACAGTTTCCTACAGAGACAATCTGGCTTACAAATGAAATCATCCACAACCCAACTGTTAATAAGCGATTGGAAGACATGAAAGTGCAGAATATTCCTTTGAAAGAAGGAATTAAACAATTTGACGTTGTCAACAAGGGCGATGTTGTGGTTTTGCCTGCTTTTGGAGCTGCAGTGGATGAGATGTTGACCTTGAGTGAGAAGAATGTACAAATTGTTGATACAActtgcccatgggtttcaaagGTCTGGAATTCTGTTGAGAAGCATAAGAAAGGAGATTACACATCAATCATACATGGTAAATATGCCCACGAGGAAACTGTAGCAACTGCATCTTTTGCAGGAAAGTATATCATCGTGAAGAATATGGCAGAGGCTGAATATGTTTGTGATTATATTCTTGGTGGTGAACTTAATGGATCCAGCTCAACTAAAGATGCATTTTTAGAGAAATTCAAATATGCAGTTTCTGAGGGATTTGACCCAGACAGAGACCTGATTAAACTTGGCATTGCAAATCAGACAACAATGCTCAAGGGAGAGACTGAAGAGATTGGGAAACTAGTGGAGAGGACTATGATGCGCAAATTTGGTGTGGAAAACATCAATGAGCACTTCTTAAGCTTCAACACCATTTGTGATGCTACTCAGGTAGAGAGACAAGATGCTATGTACAAGCTGGTGGAAGAAGATATGGATCTTATGTTAGTAATTGGTGGGTGGAACTCAAGCAATACCTCACACCTGCAAGAGATAGCTGAGGAACGTGGGATTCCTTCTTACTGGATTGACAGCGAGAAAAGAATTGGTCCAGGAAACAGAATAGCATACAAATTGAATCATGGTGAGCTGGTAGAGAAAGAAAATTTCCTACCAGAGGGTCCAATAACAATTGGCGTAACATCTGGCGCGTCCACACCAGACAAGGTTGTTGAAGATGCCCTCATCAAGGTGTTTGATTTAAAACGTGAAGAGTTATTGCAATTGGCGTAA 1401 0.4218 MAISPHLCTIPTTRNDLALPDKFTRFGTFRCRKLPLSVRCSADSSSSSTASVESDFDAKLFRKNLTRSKNYNRKGFGHKEETLELMNREYTSDIIKTLKENGYEYTWGNTTVRLAEAFGFCWGVERAVQIAYEARKQFPTETIWLTNEIIHNPTVNKRLEDMKVQNIPLKEGIKQFDVVNKGDVVVLPAFGAAVDEMLTLSEKNVQIVDTTCPWVSKVWNSVEKHKKGDYTSIIHGKYAHEETVATASFAGKYIIVKNMAEAEYVCDYILGGELNGSSSTKDAFLEKFKYAVSEGFDPDRDLIKLGIANQTTMLKGETEEIGKLVERTMMRKFGVENINEHFLSFNTICDATQVERQDAMYKLVEEDMDLMLVIGGWNSSNTSHLQEIAEERGIPSYWIDSEKRIGPGNRIAYKLNHGELVEKENFLPEGPITIGVTSGASTPDKVVEDALIKVFDLKREELLQLA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0243 466 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 110 458 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Sto10g0243 466 Gene3D - 212 345 - -
Sto10g0243 466 Gene3D - 121 211 - -
Sto10g0243 466 CDD lytB_ispH 112 451 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Sto10g0243 466 Gene3D - 346 465 - -
Sto10g0243 466 Pfam LytB protein 112 451 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Sto10g0243 466 TIGRFAM ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 112 451 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Sto10g0243 466 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 6 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0243 Sto-Chr10 2017251 2020823 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0243 K03527 - gmx:100818067 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0243 10 2017251 2020823 Sto10g0243 10 2017251 2020823 ECH