Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0232 ATGGCGGTTCACCTCTTTATTCGTTTTCCCATCGCAATACGAACTCGCAAATCCTTGTCTCTCTTCTTTTCCCCTttctcctcttctccttcttcaccATCTTCCGATGAGGAAAGTGTGGTAACCACCGTCGTCTCGATCCTCTCCCACCACCGTTCCAAGTCCCGTTGGAGCCGCCTCCGTTCTCTCTACCCCAATGGCTTTAACCCCACCGACTTTTCCAAAATCACCCTTCAACTCAAGAACAAACCCCATCTCGCACTCCAATTCTTCCGCTATACCAAATCTCTCTGCAATCACAATCTTTCCTCTTACTCCACAATCGTACACATTCTCGCTCGTGGTCGTCTCAAATCGCATGCCCAGGAAGTTATTCGGACCGCCATTCGTGCTTCCAAATTGCAGGACAACGATGACGAACACCATCTAGGGTCGGCTCCATTAAAGGTATTTTCGAATCTCGTGAAGACTTACAAAGATTGTGGGTCGGCTCCGTTTGTGTTTGATTTGTTGATCAAAGCTTGTTTGGAATCAAAAAAAGTTGAGCCTTCAATTGAAATCATGAGATTGTTACAGTCCCGTGGGATTAACCTGAAAGTCAGTACGTTGAATTCTTTGATTTATTGCGTTTGTCAATGTCGTGGGGTTGATGCAGGATATGAAATTTACAGAGAGGTGAAGGAGATATGGGATGAAATGGGTGAACTGAACTGTGCTCCGAATGCTTATAGCTATACTGTATTGATGGCTGCATTTTGTGAGGAAGGGAGGTTGGAAGATGCAGAGAAGTTGTGGGTAGAAATGAGAAATGAGGAAATGGAGCCTGATGTGGTGAGTTATAACACCTTAATTAGTGGTTTTTGCAAGACTGGAAATGTTAGAAGGGCTGAAGAATTTTTCAGAGAAATGGAAGTGGGTGGTATTGAAAGTACTGCTACAACATATGAGCATCTCATCAAGGGATATTTTGATATTGGCGATATTGATTCAGCTATTCTTGTTTACAAGGATATGTGTAGGAAAGCTTTTAAGCCAGAGGCCTTAACCCTTGATATGATGATTAGGTTACTTTGTGATAAGTTGAGAGTTCATGAAGCTCTGGAGTTTCTCAGATATGCAATGGATAAGTTTGATTTGTTTCCCAAAGAAAAGAGTTATGAGGCCTTGATAAAGGGGTTATGTTATGAGGGGAAGATGGAAGAAGCGTTGAAGCTTCAGGTCGAGATGGTGGGAAAAGGGTTTCGACCGAATGTGGATATATATAATGCTTTCATTGATGGGTATATCAGACATGGGAATGAGGAAATGGCAGAAGCTTTAAGGAAAGAAATGTTGCAAACTCAGATACAGAGCTAA 1356 0.4174 MAVHLFIRFPIAIRTRKSLSLFFSPFSSSPSSPSSDEESVVTTVVSILSHHRSKSRWSRLRSLYPNGFNPTDFSKITLQLKNKPHLALQFFRYTKSLCNHNLSSYSTIVHILARGRLKSHAQEVIRTAIRASKLQDNDDEHHLGSAPLKVFSNLVKTYKDCGSAPFVFDLLIKACLESKKVEPSIEIMRLLQSRGINLKVSTLNSLIYCVCQCRGVDAGYEIYREVKEIWDEMGELNCAPNAYSYTVLMAAFCEEGRLEDAEKLWVEMRNEEMEPDVVSYNTLISGFCKTGNVRRAEEFFREMEVGGIESTATTYEHLIKGYFDIGDIDSAILVYKDMCRKAFKPEALTLDMMIRLLCDKLRVHEALEFLRYAMDKFDLFPKEKSYEALIKGLCYEGKMEEALKLQVEMVGKGFRPNVDIYNAFIDGYIRHGNEEMAEALRKEMLQTQIQS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0232 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Sto10g0232 451 Pfam PPR repeat family 313 358 IPR002885 -
Sto10g0232 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Sto10g0232 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Sto10g0232 451 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 226 449 - -
Sto10g0232 451 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 21 227 - -
Sto10g0232 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Sto10g0232 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Sto10g0232 451 Gene3D Tetratricopeptide repeat domain 74 227 IPR011990 GO:0005515
Sto10g0232 451 Gene3D Tetratricopeptide repeat domain 328 451 IPR011990 GO:0005515
Sto10g0232 451 Gene3D Tetratricopeptide repeat domain 228 327 IPR011990 GO:0005515
Sto10g0232 451 Pfam Pentatricopeptide repeat domain 385 426 IPR002885 -
Sto10g0232 451 Pfam PPR repeat 273 304 IPR002885 -
Sto10g0232 451 Pfam PPR repeat 237 269 IPR002885 -
Sto10g0232 451 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 21 227 - -
Sto10g0232 451 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 226 449 - -
Sto10g0232 451 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Sto10g0232 451 TIGRFAM PPR: pentatricopeptide repeat domain 314 345 IPR002885 -
Sto10g0232 451 TIGRFAM PPR: pentatricopeptide repeat domain 420 446 IPR002885 -
Sto10g0232 451 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Sto10g0232 451 TIGRFAM PPR: pentatricopeptide repeat domain 278 309 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0232 101 450 Glycosyltransferase AT1G05670 27.762 3.50e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0232 - - pvu:PHAVU_011G049000g 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0232 10 1968919 1970394 Sto10g0232 10 1968919 1970394 ECH