Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0223 ATGACAAACGTAAAAGGAGGAGGTACAATGGTAGTAGAGCCAACTAACCTGCACCGCCCCAAATTCGGAGCTATGTTGCGCGCCGATCCGACGTCGTTTTACTCCTGCGATTTCGACGACGACGATACGAGTACCAGCCCGCGATGGTACCCCGATAGCACCACCACCAGCACCACCGCGTCTCCGTCTCCTTACCTGATGTCGCCATGGAATCCGACCTACTCTCCGTACAGCAAATCTCCGTGGATACTCTCGTCTCCGATGAACAATTACGACGCCGgcagcggcggcggcggcggcagaGTTGGAGGTTGCGACAAcatcaacaatttcccccaaAATAGCCTCATCAGATCGCTAGTACGCGAGGAGGGCCACATATATTCGCTGGCGGTTTCTGGCGATTTGTTGTACACAGGTTCCGATAGCAGGAACATCAGAGTGTGGAAGAACCTGAAAGGCTACGCAGGTTTCAAATCGAGCAGTGGATTAGTGAAAGCAATTGTAATCTCCGGCGAGAAAATCTTCACCGGCCACCAGGACGGCAAAATCAGAGTGTGGAAGAGCTCGCGGAAAGATCCGAGCTACCACAAACGCATCGGAAGCTTACCTACTTTCAAAGACTTCGTGAAGAACTCGACGAATCCGAAGAACTACGTGAAAATCCGAAGGCACAAGAAATCGTTACGAATCAAGCATTACGACGCCGTTTCGAGCCTGAGCTTGGACGAAGCGGAAGGTTTGTTATACTCAGGTTCGTGGGACAAAACGCTGAAAGTGTGGCGAATCGCGGATTTCAAATGTTTGGAATCCATCCAAGCCCACGACGACGCCGTGAACTCGGTGGCGGCTGGGTTCCAGTGCTTCGCGTTCACGGGCTCCGCGGATGGGACCGTCAAGATGTGGAGAAGGGAGAGCACGTGGGAAGGCAAGAGTGGCGGGATCAAGACGAAGCACGTGCTGGATCGCGTTCTGTTACGGCAGGAGAACGCGGTAACGGCTCTGGCGGTGAACGGGTCGTCCACGGTTTTGTATTGCGGGTCGTCGGACGGGTTGGTGAACCTGTGGGAGCTAGACTGGAAGAACAAGCTGGCTCACGGTGGGGTTCTGAAGGGTCACAAGATGGCGGTTCTGTGCTTAGCCGCTGGGAGGAACCTTGTGTTCAGTGGTTCGGCGGATAAGAAAGTTTGCGTGTGGAAGAGGGAGGTGAATGGGGACCACACGTGCCTTTCGGTTCTGACGGGTCATACCGGACCCGTTAAGTGTATAGCGGCtagagaagaagaggaggagtaTCCTCAACGGCGCCGTTGGACGGTTTATACGGGGAGCTTGGATAGGTCCGTGAAGGTGTGGCGCGTGTGGTCACACTCGGCGCAGCCGGTGGTGAAGAGTAATAATGGCCACGCGTGGTCGGTGGAGAGAGTGGGGGTGGGGTTTCCTTCGCCTATGAGCAAAAGCAAGATGCTGGTTGGGACGTTTTACTGGAGGATGCTCAAGGCATTGGCATGTCTCGGAGTATAG 1524 0.5236 MTNVKGGGTMVVEPTNLHRPKFGAMLRADPTSFYSCDFDDDDTSTSPRWYPDSTTTSTTASPSPYLMSPWNPTYSPYSKSPWILSSPMNNYDAGSGGGGGRVGGCDNINNFPQNSLIRSLVREEGHIYSLAVSGDLLYTGSDSRNIRVWKNLKGYAGFKSSSGLVKAIVISGEKIFTGHQDGKIRVWKSSRKDPSYHKRIGSLPTFKDFVKNSTNPKNYVKIRRHKKSLRIKHYDAVSSLSLDEAEGLLYSGSWDKTLKVWRIADFKCLESIQAHDDAVNSVAAGFQCFAFTGSADGTVKMWRRESTWEGKSGGIKTKHVLDRVLLRQENAVTALAVNGSSTVLYCGSSDGLVNLWELDWKNKLAHGGVLKGHKMAVLCLAAGRNLVFSGSADKKVCVWKREVNGDHTCLSVLTGHTGPVKCIAAREEEEEYPQRRRWTVYTGSLDRSVKVWRVWSHSAQPVVKSNNGHAWSVERVGVGFPSPMSKSKMLVGTFYWRMLKALACLGV 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0223 507 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 263 - -
Sto10g0223 507 Pfam WD domain, G-beta repeat 368 400 IPR001680 GO:0005515
Sto10g0223 507 Pfam WD domain, G-beta repeat 408 452 IPR001680 GO:0005515
Sto10g0223 507 Pfam WD domain, G-beta repeat 330 356 IPR001680 GO:0005515
Sto10g0223 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 359 IPR001680 GO:0005515
Sto10g0223 507 Pfam Nucleoporin Nup120/160 120 274 - -
Sto10g0223 507 PRINTS G protein beta WD-40 repeat signature 249 263 IPR020472 -
Sto10g0223 507 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Sto10g0223 507 PRINTS G protein beta WD-40 repeat signature 344 358 IPR020472 -
Sto10g0223 507 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 460 IPR045182 -
Sto10g0223 507 CDD WD40 124 453 - -
Sto10g0223 507 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 15 460 - -
Sto10g0223 507 Gene3D - 93 202 IPR015943 GO:0005515
Sto10g0223 507 Gene3D - 323 493 IPR015943 GO:0005515
Sto10g0223 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Sto10g0223 507 SUPERFAMILY WD40 repeat-like 111 463 IPR036322 GO:0005515
Sto10g0223 507 Gene3D - 219 322 IPR015943 GO:0005515
Sto10g0223 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 302 IPR001680 GO:0005515
Sto10g0223 507 SMART WD40_4 265 303 IPR001680 GO:0005515
Sto10g0223 507 SMART WD40_4 113 150 IPR001680 GO:0005515
Sto10g0223 507 SMART WD40_4 406 453 IPR001680 GO:0005515
Sto10g0223 507 SMART WD40_4 224 262 IPR001680 GO:0005515
Sto10g0223 507 SMART WD40_4 318 357 IPR001680 GO:0005515
Sto10g0223 507 SMART WD40_4 363 400 IPR001680 GO:0005515
Sto10g0223 507 SMART WD40_4 151 188 IPR001680 GO:0005515
Sto10g0223 507 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 400 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0223 Sto-Chr10 1902360 1905102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0223 233 403 Miscellaneous Gene Families AT5G08390 27.841 2.60e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0223 - - lang:109355444 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0223 10 1902360 1905102 Sto10g0223 10 1902360 1905102 ECH