Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0196 ATGGCATCAATCCTGATGATTCAGCGTGCGCGAAGCACAATGCTTTCTTCCTCATCCTTCCTCAAGGACAACTATTGCTACGGCCAAAGCTTACTAAAAGCTCCCATGAGCACTTCCGCGATTCCAAATGAGTATCAGAGAACTCATCCTCATCAACCACCATCGGATGCTAGAGCTTTACGGGATCAGGGAGACCCAACCCACTTCGTTCAACAGGGAAACCCTAATAATCAATTCAATCGATTTCAGAACATCCCGGGTCAGTACCCTAATCAGAGTCAGAATCCACACAACAGGGAGTATCCTGATCAGGGGCGGCGATATGCTCAGGGAAACCATAATCAGTGGAATCCTCAATATCAAGGTCCTCCTCAAGTGAACcctcaaaaccctaattttCAGCCAAACTCTAGCCCCAATCGATGGAATAATCAAAACCAGGGATACCCGCAAGCTGGAGGCCCCAATCAGTTTAACAGTAGGACTCAAGGGTACCCCCAAAGTGGAAGTTCTAATCAGTTGGGCAATCAAGCTTCTAATCAAGGACAAACCACTGAAAGCCAAGCTCCTGTTTCTCCACCTCCTTCGATTATTGATTTGACACGAGTGTGCCAAGAGGGAAAGGTTAAAGAAGCCATTGAAGTGTTGGAAAAAGGGGTCAAAGCTGATGCTAGTTGTTTTTATACTCTGTTTGATTTATGTGGTAAATCAAAATCTCTTGAGGACGCCAAAAAGGTCCATGATTACTTTTTGCAGTCTACGTTTAGGAGTGATCTTAAATTGAATAACAAGGTACTTGAAATGTATGGCAAGTGCAAAAGCATGACTGATGCACGCAGAGTGTTTGATCACATGGCCAATAGAAATTTGGATTCTTGGCACTTGATGATACATGGGTATGCGAATAACACCATGGGAGATGAGGGCTTGCAATTGTTTGAGCAGATGAAGGAGCAGGGATTGGAACCCACCTCTGAGACTTTCCTAGCAGTTTTATCAGCTTGTGCTAGTGAAGCTGTGGAGGATGGCTTCATGCATTTTGAGTCCATGAAAACTAAGCATGGAATTGAACCAGGGATGGAGCATTATATGGGACTTCTTGATGTTTTGGGCCAATCTGGCTATCTTAAGGAAGCTGAGGAATATATTGAGAATTTGCCTTTTGAGCCTACAGTCTCCTTTTGGGAGAGACTAAGGGATTATGCTCGGACTCATGGAGAAATCGATCTCGAAGATCATGCTGAGGAGTTGATGATCAGCCTTGATCCATCAAAGGCTATTGCCAGTAAGATCCCTACCCCACCTCCAAAGAAGCGAACTGCAATTAACATGCTTGATAGGAAAAACAGGATTGTTGAGTATAAGAATCCTACACTTTACAAGGATGATGAAAAGTTGAAAGCATTGAGTGGGATGAAAGAAGCAGGTTATGTTCCTGATACAAGATATGTTCTTCACGACATTGATCAAGAAGCAAAGGAGCAAGCCTTGCTCTACCACAGTGAGCGTCTAGCAATTGCCTATGGTCTGATTAGTACTCCACCTAGAACACCTCTCAGAATCATTAAGAATCTTCGTGTATGTGGTGACTGCCACAATGCCATCAAGATCATGTCCAGGATTGTGGGGAGGGAATTAATTGTTAGAGATAACAAAAGGTTTCATCATTTCAAGGATGGAAAATGCTCTTGTGGGGATTACTGGTGA 1707 0.4323 MASILMIQRARSTMLSSSSFLKDNYCYGQSLLKAPMSTSAIPNEYQRTHPHQPPSDARALRDQGDPTHFVQQGNPNNQFNRFQNIPGQYPNQSQNPHNREYPDQGRRYAQGNHNQWNPQYQGPPQVNPQNPNFQPNSSPNRWNNQNQGYPQAGGPNQFNSRTQGYPQSGSSNQLGNQASNQGQTTESQAPVSPPPSIIDLTRVCQEGKVKEAIEVLEKGVKADASCFYTLFDLCGKSKSLEDAKKVHDYFLQSTFRSDLKLNNKVLEMYGKCKSMTDARRVFDHMANRNLDSWHLMIHGYANNTMGDEGLQLFEQMKEQGLEPTSETFLAVLSACASEAVEDGFMHFESMKTKHGIEPGMEHYMGLLDVLGQSGYLKEAEEYIENLPFEPTVSFWERLRDYARTHGEIDLEDHAEELMISLDPSKAIASKIPTPPPKKRTAINMLDRKNRIVEYKNPTLYKDDEKLKALSGMKEAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0196 568 PANTHER OS07G0578800 PROTEIN-RELATED 3 563 IPR045215 GO:0003723|GO:0009451
Sto10g0196 568 Pfam PPR repeat family 292 336 IPR002885 -
Sto10g0196 568 TIGRFAM PPR: pentatricopeptide repeat domain 292 324 IPR002885 -
Sto10g0196 568 Gene3D Tetratricopeptide repeat domain 198 340 IPR011990 GO:0005515
Sto10g0196 568 Gene3D Tetratricopeptide repeat domain 341 431 IPR011990 GO:0005515
Sto10g0196 568 MobiDBLite consensus disorder prediction 108 123 - -
Sto10g0196 568 MobiDBLite consensus disorder prediction 67 99 - -
Sto10g0196 568 Pfam DYW family of nucleic acid deaminases 476 568 IPR032867 GO:0008270
Sto10g0196 568 MobiDBLite consensus disorder prediction 43 197 - -
Sto10g0196 568 MobiDBLite consensus disorder prediction 131 194 - -
Sto10g0196 568 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Sto10g0196 568 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0196 Sto-Chr10 1622164 1624014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0196 214 568 Glycoside Hydrolase AT3G49170 36.951 7.95e-76 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0196 - - gmx:100818823 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0196 10 1622164 1624014 Sto10g0196 10 1622164 1624014 ECH