Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0151 ATGGCCTGTGATTTTGCTGTAGTGACCAACGGCAATGTTAACTCACATTCTAATCCACAGAGGGTTTACCAAGTGGTTGTGGCTGCGACCCGTGATATGGGTATCGGTAAGGATGGAAAATTGCCCTGGAAAATGCCTACTGAtctcaaattttttaaggagaTCACTTTAACAACATCTGATCCTGGGAAGAAGAATGCAGTTATAATGGGTAGAAAAACATGGGAGAGCATCCCTCTTGACAATCGTCCTCTTCCTGGTCGCCTTAATGTTGTTCTAACTCGCTCTGGAAGTTTCGATATTGCAACTGCAGAGAATGTTGTTATATGCGGAAGCATGTCTTCTGCTTTGGAATTGTTAGCTGCTTCTCCTTACTGTCTGTCAATTGAGAAAGTATTTGTCATAGGAGGTGGTCAGATATTTAGAGAGGCTCTTAATGCACCTGCATGTGAAGCTATCCACATCACTGAAATTGAGACAAGCATTGACTGTGATACTTTCATGCCTCAAATTGATTCCTCTGTATTTCAGCCATGGTACTCTTCCTTTCCTAAGGTGGAGAACGATATCCGCTATTGTTTTACCACTTATGTGCGAGTAAGGAATTCTACAGTGGAATCCCTGAGTCAGAATTCTGATGCAATTTGTGATAGTAGATCAGATTCCACAAAATTTGAGGTCAAGAACTTCTCTTTCCTTCCTAGAATGATTTTTGAGAGACATGAGGAGTACAAGTATCTCAGACTGGTTCAAGATATCATATCTGAAGGTACTGCCAAGGATGATAGAACTGGGACTGGTACCTTCTCGAAATTTGGTTGCCAGATGAGGTTCAATTTGCGCAGAAGCTTCCCTCTTCTAACAACTAAGAAAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTATGGTTCGTTAGTGGTTCAACAAATGCCAAGGTTCTGCAGGAAAAAGGCATCCATATATGGGATGGCAATGCATCCAGAGAATACCTTGACAGGCAAGCACTGACTAATGACTATCTTATCATTGGATTGGCTGAAAGGGAGGAAGGTGACCTAGGACCCGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAAGTACAGTGACATGCATGCTGACTACTCTGGCAAAGGATTTGATCAGCTTTTAGATGTTATTCACAAGATAAAGCATAATCCTGATGATCGGCGGATTATTCTCTCAGCTTGGAATCCTGCTGATCTTAAGCTGATGGCACTTCCTCCCTGCCACATGTTTGCACAGTTTTATGTAGCAAATGGGGAATTATCTTGTCAAATGTATCAGAGATCTGCAGACATGGGCTTGGGCGTGCCGTTTAATATTGCATCTTATGCTCTCCTGACATGCATGATTGCTCATGTTTGTGaACTTGTTCCAGGTGATTTTATCCATGTTATTGGGGATGGTCATGTTTACCGCAATCATGTGAGACCATTGCAGGAGCAGCTCCAGAACCTTCCTAAACCTTTTCCAATTTTGGAAATAAATGCAAAGAAGAAGGATATAGATTCTTTTGTGGGTGCTGATTTTAAACTCATAAGTTATGATCCTCACCAGAAGATAGAAATGAAGATGGCTGTGTAA 1608 0.4154 MACDFAVVTNGNVNSHSNPQRVYQVVVAATRDMGIGKDGKLPWKMPTDLKFFKEITLTTSDPGKKNAVIMGRKTWESIPLDNRPLPGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYCLSIEKVFVIGGGQIFREALNAPACEAIHITEIETSIDCDTFMPQIDSSVFQPWYSSFPKVENDIRYCFTTYVRVRNSTVESLSQNSDAICDSRSDSTKFEVKNFSFLPRMIFERHEEYKYLRLVQDIISEGTAKDDRTGTGTFSKFGCQMRFNLRRSFPLLTTKKVFWRGVVEELLWFVSGSTNAKVLQEKGIHIWDGNASREYLDRQALTNDYLIIGLAEREEGDLGPVYGFQWRHFGAKYSDMHADYSGKGFDQLLDVIHKIKHNPDDRRIILSAWNPADLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCELVPGDFIHVIGDGHVYRNHVRPLQEQLQNLPKPFPILEINAKKKDIDSFVGADFKLISYDPHQKIEMKMAV 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0151 535 CDD DHFR 26 198 IPR001796 GO:0004146|GO:0046654
Sto10g0151 535 PIRSF DHFR-TS 8 535 IPR012262 GO:0004146|GO:0004799|GO:0006730
Sto10g0151 535 SUPERFAMILY Dihydrofolate reductase-like 18 200 IPR024072 -
Sto10g0151 535 Pfam Dihydrofolate reductase 24 199 IPR001796 GO:0004146|GO:0046654
Sto10g0151 535 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 233 535 IPR036926 -
Sto10g0151 535 CDD TS_Pyrimidine_HMase 246 488 IPR023451 -
Sto10g0151 535 TIGRFAM thym_sym: thymidylate synthase 245 535 IPR000398 GO:0004799|GO:0006231
Sto10g0151 535 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 224 535 IPR036926 -
Sto10g0151 535 Pfam Thymidylate synthase 245 535 IPR023451 -
Sto10g0151 535 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 2 535 - -
Sto10g0151 535 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 34 56 IPR017925 GO:0004146
Sto10g0151 535 Gene3D Dihydrofolate Reductase, subunit A 5 202 IPR024072 -
Sto10g0151 535 PRINTS Thymidylate synthase family signature 284 305 IPR000398 GO:0004799|GO:0006231
Sto10g0151 535 PRINTS Thymidylate synthase family signature 386 405 IPR000398 GO:0004799|GO:0006231
Sto10g0151 535 PRINTS Thymidylate synthase family signature 412 427 IPR000398 GO:0004799|GO:0006231
Sto10g0151 535 PRINTS Thymidylate synthase family signature 430 456 IPR000398 GO:0004799|GO:0006231
Sto10g0151 535 PRINTS Thymidylate synthase family signature 468 485 IPR000398 GO:0004799|GO:0006231
Sto10g0151 535 PANTHER THYMIDYLATE SYNTHASE 1 2 535 IPR045097 GO:0016741
Sto10g0151 535 ProSitePatterns Thymidylate synthase active site. 397 425 IPR020940 GO:0004799|GO:0006231
Sto10g0151 535 Hamap Thymidylate synthase [thyA]. 243 535 IPR000398 GO:0004799|GO:0006231
Sto10g0151 535 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 22 199 IPR001796 GO:0004146|GO:0046654
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0151 Sto-Chr10 1213582 1216253 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0151 K13998 - tcc:18607742 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0151 10 1213582 1216253 Sto10g0151 10 1213582 1216253 ECH