Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0148 ATGGAGCTCACAACGATGTCTCAAGCTCTGCAACTTCACGCTCAAGTACTCAAATCAGGCATTCGAAACAGCGATTCCCAAAAAGCCCTTTCCGATCTCTTCACCTTCGCCGCCCTCTCTCCCGCCGGCGATCTCAACCACGCTCGTCTCATCCTCAACTCCGATCCTTCCTTAAACTCTTACTTCTACAACACCATCCTTCGAGCTTATTCTCGTAGCTCCGACCCCTCTCATCCCTCACAAGccctttctcttttcctctccATGCTCCGTCATGAACCCACCCATTTCGTACCCAGACCCGACAAGTTCACTTTCCCCTTTGTGCTCAAATGTTGCGCCCGTTTGAATCTGACCCGTCAAGGGAAACAGATTCATGGGTTGATTCTGAAGGTGGGTTTGAGTTCGGATCGGTATATTGGGAATTCGTTGGTTTATATGTATTCGgaatttggggatttgggtGTTGCACATGAAGTGTTTGGGAAAATGTCTGAGAGAGATGTGGTGTCCTGGACATCGATGATTGACGGGTTTGTTGATGGTGATCGGCCTAGTGAGGCAATAAAGTTGTTTCTGGAAATGTTGGAATGTGGGGTTGAGGTGAATGATGCTACGGTTGTGTCTGTTCTAAGAGCATGTGCAGAGATGGGAGCATTAAGTGTGGGGAAGACAGTGCATAGGATTGTGAAGGAAAGGAGGATTCATAATCAGGCTAATGTTATAACAGCGCTTATCGATATGTATGCGAAAAGCGGGTGTTTAGAAAGTGCAAGACAGGTGTTTGATGATGTTGAGGATGATAAAGATGTTTTTGTTTGGACAGCAATGATTTCTGGCCTTGCTAGCCATGGACAATGCAAGGAAGCTATTAAATTATTTACTGAGATGGAAGCTTCTAAAATAAAACCTGATGAGAAGACAATGACAGCAGTTTTATCAGCATGTAGGAATGCAGGTTTGATACATGAAGCTTACATATTTCTGAATAATATGCAAAAACGACACGGTATAAGACCTACAATTCAACATTTCGGTTGCATTGTAGACCTATTAGCTAGAGAAGGACGTTTGAAGGAAGCTGAAGAATTCATCAACAAAATGCCTATTAAACCTGATGCTGTTCTTTGGAGAACACTAATATGGGCATGTAAAGTTCATGAGGATACTCATAGGGCAGAGCATTTGATGAAACACCTTAAGCTACAAGACATGGATGCAGATGATAGTGGAAGTTTCATACTTGCAAGCAATGTTTATGCATCAGAGGGAAAGTGGTGTAATAAGGCAAAGGTGAGAGAGTTGATGAAACAAAAAGGACTAATAAAGCCAGCAGGATCTAGTAGGATTGAAGTTGAAGGTATAGTACATGAGTTTGTGATGGGAGATTATAATCACTCTGAAGCAGAGAATATATATGTGAAATTGGATGAGATGGTaaataaattgagaaaggaagGGTATGTCCCAAAAGTTTCAGAGGTGTTGCTTGAGGTAGATGATGAGGAAAAAGCAATTCAGCTTCTTCACCATAGTGAGAAGCTTGCTCTTGCGTTTGGACTAATCAAGACAAGTCCAGGGTCTGATATCATTAGGATAGTGAAAAATCTACGATCTTGTGAGGACTGTCATGAGTTTATGAAACTAATCTCTAGGGTATACCATAGAGACATCATAGTGAGAGATAGAATACGTTTCCATCATTTCAAAAATGGTGAATGCTCTTGCAAGAATTACTGGTAG 1743 0.4062 MELTTMSQALQLHAQVLKSGIRNSDSQKALSDLFTFAALSPAGDLNHARLILNSDPSLNSYFYNTILRAYSRSSDPSHPSQALSLFLSMLRHEPTHFVPRPDKFTFPFVLKCCARLNLTRQGKQIHGLILKVGLSSDRYIGNSLVYMYSEFGDLGVAHEVFGKMSERDVVSWTSMIDGFVDGDRPSEAIKLFLEMLECGVEVNDATVVSVLRACAEMGALSVGKTVHRIVKERRIHNQANVITALIDMYAKSGCLESARQVFDDVEDDKDVFVWTAMISGLASHGQCKEAIKLFTEMEASKIKPDEKTMTAVLSACRNAGLIHEAYIFLNNMQKRHGIRPTIQHFGCIVDLLAREGRLKEAEEFINKMPIKPDAVLWRTLIWACKVHEDTHRAEHLMKHLKLQDMDADDSGSFILASNVYASEGKWCNKAKVRELMKQKGLIKPAGSSRIEVEGIVHEFVMGDYNHSEAENIYVKLDEMVNKLRKEGYVPKVSEVLLEVDDEEKAIQLLHHSEKLALAFGLIKTSPGSDIIRIVKNLRSCEDCHEFMKLISRVYHRDIIVRDRIRFHHFKNGECSCKNYW 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0148 580 Gene3D Tetratricopeptide repeat domain 217 459 IPR011990 GO:0005515
Sto10g0148 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Sto10g0148 580 Gene3D Tetratricopeptide repeat domain 2 166 IPR011990 GO:0005515
Sto10g0148 580 Pfam PPR repeat family 269 316 IPR002885 -
Sto10g0148 580 Pfam PPR repeat family 167 215 IPR002885 -
Sto10g0148 580 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 568 - -
Sto10g0148 580 Coils Coil 466 486 - -
Sto10g0148 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Sto10g0148 580 Pfam DYW family of nucleic acid deaminases 487 580 IPR032867 GO:0008270
Sto10g0148 580 TIGRFAM PPR: pentatricopeptide repeat domain 170 203 IPR002885 -
Sto10g0148 580 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Sto10g0148 580 Pfam PPR repeat 345 368 IPR002885 -
Sto10g0148 580 Pfam PPR repeat 243 266 IPR002885 -
Sto10g0148 580 Pfam E motif 387 451 IPR046848 -
Sto10g0148 580 PANTHER TRANSCRIPT PROCESSING PROTEIN, PUTATIVE-RELATED 1 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0148 Sto-Chr10 1166899 1168641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0148 2 580 Glycoside Hydrolase AT3G49170 35.678 3.19e-122 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0148 - - aip:107613729 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0148 10 1166899 1168641 Sto10g0148 10 1166899 1168641 ECH