Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0073 ATGGGGTTCTTCAGTACAATATTTGGGATTTGTGGATTTGGATTTGGGATTTCTATTGGTCTTATTATTGGATATTTTCTCTTCATTTACATCCAACCCAGCGATGTGAAGGATCCTGTAATTTGTTCATTGGCAGAGCAAGAACCAGAATCTTTGCAGCGAATGCTTCCGGAGGTTCCGATTTGGATGAAAAATCCGGACTTTGATCgcGTTGATTGGCTAAACAGGTTTCTTGAATTTTTATGGCCTTACCTTGACAAgGCTATTTGCAAAACTGTAAAGGGCATTGTGACACCCATAATTGATGAGCAGATTAAAAGCTATAAGATGATAGAGTCTGTTGAGTTTGAATCACTAACATTAGGGAGCCTACCACCAACTTTTCAAGGGATGAAAGTCTTTGTGACTGATGAGAAGGAGTTAATCATGGAGCCTTGTATAAAATGGGCAGGAAATCCTAATGTCATTGTTGCTGTTAAGGCGTTCGGGTTAAAAGCAACTGCTCAGGTGGTGGATTTGCAAGTTTTTGTTCTGCCTCGAGTTACTTTGAAGCCTTTGGTTCCATCTTTTCCTTGCTTTGCCAACATATTTGTGTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAACTTATAGGGTTTGATCTCATGGCTATTCCTGGCCTTTACAGGTTTGTTCAGGAGCTTATCAAAGATCAAGTTGCAAATATGTATTTATGGCCCAAGACTCTGGAAGTTCAAGTTTTAGACCCAATAAAAGCCTTGAGAAGACCTGTTGGAGTTCTAAATGTAAAGGTCTTGAGAGCAATGAAGTTAAAGAAGTTGGATATTCTTGGTGCATCTGATCCTTACGTAAAACTAAAGCTTTCTGATGACAAGATGCCATCAAAAAAGACTTCAGTGAAGCACAAAAACTTGAATCCTGAATGGAATGAAGAATTCAATATGCTTGTTAAAGACCCTCTAAACCAAGttttaaggataaaagttcTCGACTGGGATCagGTTGGGAAGCATGAAAAGATGGGTGTAAGTATAGTTCATATAAAAGACCTTTCCCCAGAAGAGGCTAGAGTTTTCACTCTTGATCTGTTGAAAAACATAGAGGCAGAAGTAAACCAAAGTGAGAAATCACGTGGTCAAGTTGTTGTAGAATTAAAATATAAGGCATTCAAAGAGGAGGACTTAGTCCATGGTGAAGAGAAAATAGTGACACAGAAAGTTCCAGAAGGGACTCCTGCTGGTGGAGGTTTGCTTGTGGTTATAGTCCATGAAGCTCAAGATGTTGAAGGAAAGTACCACACTAATCCACAAGCAAGAGTTATTTTCAAAGGGGAGCAGAAGAGGACTAAGGTAGAATACAAATTACAGCACTTGAAAAGGAATAGAGATCCAAGATGGAATGAGGAGTTTCAATTTGTAGCAGAGGAGCCtcccactaatgagaaaatacATGTTGAGGTTGTCAGCACTTCCTCCCGCAATTTGCTGCGTCCCAAGGAATATTTGGGTTATGTTGAGATCGGTCTTGCGGATGTGGTTGCTAACAAGAGGATCAATGAAAAGTATCATCTTATAGACTCAAAGAATGGTCGCATCCAAATAGAGTTACAATGGATAGCTTCATAA 1632 0.3866 MGFFSTIFGICGFGFGISIGLIIGYFLFIYIQPSDVKDPVICSLAEQEPESLQRMLPEVPIWMKNPDFDRVDWLNRFLEFLWPYLDKAICKTVKGIVTPIIDEQIKSYKMIESVEFESLTLGSLPPTFQGMKVFVTDEKELIMEPCIKWAGNPNVIVAVKAFGLKATAQVVDLQVFVLPRVTLKPLVPSFPCFANIFVSLMEKPHVDFGLKLIGFDLMAIPGLYRFVQELIKDQVANMYLWPKTLEVQVLDPIKALRRPVGVLNVKVLRAMKLKKLDILGASDPYVKLKLSDDKMPSKKTSVKHKNLNPEWNEEFNMLVKDPLNQVLRIKVLDWDQVGKHEKMGVSIVHIKDLSPEEARVFTLDLLKNIEAEVNQSEKSRGQVVVELKYKAFKEEDLVHGEEKIVTQKVPEGTPAGGGLLVVIVHEAQDVEGKYHTNPQARVIFKGEQKRTKVEYKLQHLKRNRDPRWNEEFQFVAEEPPTNEKIHVEVVSTSSRNLLRPKEYLGYVEIGLADVVANKRINEKYHLIDSKNGRIQIELQWIAS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0073 543 CDD C2 263 363 - -
Sto10g0073 543 PRINTS C2 domain signature 278 290 IPR000008 -
Sto10g0073 543 PRINTS C2 domain signature 305 318 IPR000008 -
Sto10g0073 543 PRINTS C2 domain signature 327 335 IPR000008 -
Sto10g0073 543 ProSiteProfiles C2 domain profile. 399 524 IPR000008 -
Sto10g0073 543 SMART C2_3c 262 362 IPR000008 -
Sto10g0073 543 SMART C2_3c 419 523 IPR000008 -
Sto10g0073 543 Gene3D C2 domain 257 409 IPR035892 -
Sto10g0073 543 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 541 IPR045050 GO:0008289
Sto10g0073 543 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 250 IPR031468 GO:0008289
Sto10g0073 543 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 258 391 IPR035892 -
Sto10g0073 543 ProSiteProfiles C2 domain profile. 241 363 IPR000008 -
Sto10g0073 543 Pfam C2 domain 419 526 IPR000008 -
Sto10g0073 543 Pfam C2 domain 262 357 IPR000008 -
Sto10g0073 543 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 541 IPR035892 -
Sto10g0073 543 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Sto10g0073 543 Gene3D C2 domain 419 541 IPR035892 -
Sto10g0073 543 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0073 Sto-Chr10 543709 547883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0073 259 522 Lipid Metabolism Gene Families AT3G61300 27.899 6.57e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0073 - - gmx:100803978 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0073 10 543709 547883 Sto10g0073 10 543709 547883 ECH