Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0070 ATGAGTGCCTCCAGGTTTATCAAGTGTGTCACTGTAGGTGACGGAGCCGTCGGCAAGACCTGCATGCTTATTTCCTACACCAGCAATACTTTCCCTACGGATTATGTACCAACCGTCTTTGATAATTTCAGTGCAAATGTGGTTGTGGATGGAAGCACTGTGAATCTGGGGTTGTGGGATACCGCAGGCCAAGAAGATTACAATAGATTAAGACCTTTAAGCTATCGTGGAGCCGATGTATTTCTGCTTGCATTCTCTCTCATAAGCAAGGCCAGCTATGAAAATGTTGCCAAGAAATGGGTCCCTGAGTTGAGGCACTATGCACCTGGAGTCCCGATTATTCTAGTTGGGACAAAACTTGATCTTAGGGATGATAAACAGTTCTTTCAGGACCACCCTGGTGCAGTGCCCATCACGACGGCTCAGGGGGAGGAACTAAGGAAACTTATCGGTGCTCCAGTTTACGTTGAGTGCAGTTCAAAAACACAGATGAATGTGAAGGCTGTTTTTGATGCAGCTATCAAAGTTGTTCTACAGCCCCCAAagcagaagaaaaagaaaagaaaggggcAAAAGGCCTGTTCTATTTTAGGAGCAACAATCCCTTGTGCCCCACAGGATCTCTTAGGATGCTCGAAAGCAGCTCTAGTCTTTACAGTTGTGTTTGTGGCAAGTGACAACCTTCAACCTTGtttttcttctttcctttctgaTTTCAATTCCATTTCTTCACCTTCTTCAATGGCGTCCAAGAGAATTCTGAAGGAGCTCAAGGACTTGCAAAGAGACCCTCCAACTTCATGCAGTGCAGGTCCTGTGGGTGAAGATATGTTTCATTGGCAAGCAACTATTATTGGTCCTAATGATAGTCCCTATGCTGGTGGTGTTTTTCTTGTTACTATCCATTTTCCTCCTGATTATCCCTTCAAACCTCCCAAGGTTGCATTCAGGACCAAGGTATTCCATCCCAACATAAACAGTAATGGAAATATATGTTTGGACATACTAAAAGAACAATGGAGTCCTGCTCTCACTATATCCAAGGTGTTGCTATCGATTTGTTCGTTGTTAACGGATCCGAACCCAGATGATCCGCTTGTGCCGGAAATTGCTCATATGTGCAAAAGTGACAAGGTGAAGTATGAGTCCACTGCAAGAAGCTGGACCCAGAAGTATGCCATGGGCTAA 1188 0.431 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFQDHPGAVPITTAQGEELRKLIGAPVYVECSSKTQMNVKAVFDAAIKVVLQPPKQKKKKRKGQKACSILGATIPCAPQDLLGCSKAALVFTVVFVASDNLQPCFSSFLSDFNSISSPSSMASKRILKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMCKSDKVKYESTARSWTQKYAMG 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0070 395 CDD UBCc 251 389 IPR000608 -
Sto10g0070 395 CDD Rop_like 6 178 - -
Sto10g0070 395 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 248 394 IPR000608 -
Sto10g0070 395 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Sto10g0070 395 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
Sto10g0070 395 ProSiteProfiles small GTPase Rab1 family profile. 2 211 - -
Sto10g0070 395 SUPERFAMILY UBC-like 233 394 IPR016135 -
Sto10g0070 395 SMART ran_sub_2 12 216 - -
Sto10g0070 395 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Sto10g0070 395 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Sto10g0070 395 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Sto10g0070 395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Sto10g0070 395 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 321 336 IPR023313 -
Sto10g0070 395 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Sto10g0070 395 PRINTS Transforming protein P21 ras signature 7 28 - -
Sto10g0070 395 PRINTS Transforming protein P21 ras signature 30 46 - -
Sto10g0070 395 PRINTS Transforming protein P21 ras signature 47 69 - -
Sto10g0070 395 PRINTS Transforming protein P21 ras signature 109 122 - -
Sto10g0070 395 PRINTS Transforming protein P21 ras signature 155 177 - -
Sto10g0070 395 SMART ras_sub_4 4 180 - -
Sto10g0070 395 Gene3D - 5 191 IPR027417 -
Sto10g0070 395 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC3 1 197 - -
Sto10g0070 395 Gene3D Ubiquitin Conjugating Enzyme 240 395 IPR016135 -
Sto10g0070 395 SMART ubc_7 251 394 - -
Sto10g0070 395 Pfam Ubiquitin-conjugating enzyme 252 388 IPR000608 -
Sto10g0070 395 SMART rab_sub_5 7 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0070 Sto-Chr10 515593 521254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0070 249 361 Miscellaneous Gene Families AT3G17000 36.975 7.19e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0070 K04392 - gmx:100785464 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0070 10 515593 521254 Sto10g0070 10 515593 521254 ECH