Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0018 ATGGATCAAACGTCCAAGTTTATTAAAGCTCTTTTCTGGAACAACAACAATCCCAGATTGGCATGGCACTTCTTCAAGCGCATTTTGTCTTCTTCCTCATCTCCTCGCTATCTTCGTTCAATACCCGTCATCGCACGTATTCTTATTGGAGCAAGAATGCACAGGGAAATCGATGAGCTCCCTGAACTTGTGCTTGTCTCGCAGCCCCTCGACGCTGCCCGTACTTCTCTCATTTCGATCGTCCGAATCTTGGCATCATCGGGCCATGTTGATAAGGCTGTCTCACATTTAAAATCCCTTAGAACTCGGTTCCCAGCAATGCCTCCTCCTATTTCGTTATACAATGTACTCCTTCAATCAAGTATCGAAGAAAACCGGCCAGATATTGTGAAATGGCTATACAGAGATATCATTGTTGCAGGTGTTAAGCCGGAAACTTATacatttaatcttttaattcaATCCATGTGTGACTCCGGTCGTTTATATGATGCTCGGGAGCTGTTTGATAGAATGTCTGAAAAAGGATGTCAGCCGAATGAGTTCAGTATTGGGATTCTAGTTCGCGGATTCTGCAGAGCTGGGCTTACCGCTCAAGGTTTAGAGCTTCTAAACCAGAGAAAGAATGACCACCTTTCTCTCAATAAGGTAGTGTATAATACTCTGATATCTAGCTTTTGTAGAGAAGACCGAACTGAAGAAGCTGAGAAATTGCTTGAAAGGATGAGAGAGCAGGGTCTGGTTCCAGATATTGTTACCTTTAACTCTAGGATATCGGCTCTTTGTAGAGTGGGTAAAATTTTAGAAGCGTCAAGAATTTTCAGAGACATGCAAATGGACGAAGAATTAGGACTTCCCAGGCCCAATATCATAACTCACAATATAATGCTCAAAGGATTTTGCAAGGAAGGCATGTTGGAAGAAGCAAGGGCACTGCTTGACACAATGAAAAAAATTGGTAATTTTATGACGTTGGAAAGTTATAACACGTGGTTGGTGGGTTTAGTTAGAAATGGAAAGTTATTAGAGGCTCGGTTAGTTCTCAATGAGATGGTAGCTAAAAGCATTGAACCAAATATTTACTCGTACAACATTATGATGGATGGGCTGTGCAGAAAACATATGTTGTCAGATGCAAAAGGGTTGATGGATCTGATGATAAGTAATGGTATTTGCCCTGATACTGTAACTTATAGTACACTGCTCCATGGGTACTGTAGCAAAGGGAAGACTTTTAAAGCCAAAAATATTCTTCAGAAAATGATAAGCAACAGTTGTACTCCAAATACTTACACTTGCAACATATTACTGCACAGCCTGTGGAAAGAAGGGCGAACATCAGAAGCAGAGGAAATGATACTAAAGATGAACGAAAAAGGCTATCGATTAGACACTGTGACAAGTAATATTTTGATCAATGGTCTCTGCAGAAGTGGTAAATTGGACAAAGCGATTGAAATTGTTAGTAAGATGTGGACAAACAGACCTGCATCCCTTTGTAAAGGAAATTCATTTGCCAGCATAgttaatgatataaaaaatttatcaaacagATCTCCTGATGTAATCACGTATACAACCATAATTAATGGGCTATGCAAGGTTGGGAGGCTAGAGGAAgccaaaaagaaatttatagaGATGATGGCAAAAAACTTGCACCCAGATTCTGTGATCTATGATACCTTCATACAGAGTTTCTGTAAACAAGGGAATATGTCATCTGCCTATCGTGTCTTGAAGGATATGGAGAGAAATGGCTGCAGCAAGACTCTTCAAACTTACAATTCATTGATCTTGGGCTTAGGAAGTAAACACcaaatatttgaaatatatgGTTTGATGGATGAGATGCGAGAAAGAGGGGTATGTCCAGATGTTTGCAcatataacaatataattagcAGTCTTTGTGATGGAGGGAAGGTTAAGGATGCCACTTCTATTTTACATGAAATGCTAGATAAGGGCATATCTCCAAATATTTCTTCCTTCAAAATGTTGATAAAAGCTTTCTGCAAATCTAATGATTTTGGATTAGCATTTGAGTTATTTGAGGTAGCCCTGAATGCATGTGGCCACAGGGAACTCTTGTACAGTTTGATGTTCAATGAATTAGTTGCTGGAGGACAAATCTCTGAAGCAAGAAAGCTATTTGAAGTTTCATTAGATAGATCTCTTGGATTGAAAAATTTCATGTATAAAGATCTGATTGACCAACTATGCAAGAATGAAAGGTTAAATGATGCTAATTGTCTTCTTCAGAAATTAATTGCTAAGAAATATGAGTTTGAACATTCGACATTCATACCAGTGATTGATGGCTTAAGTAAAAGGGGAGACAAGCAACAAGCTGATGAACTTGCAAAGAGGATGATGAAATTGGCTTTAGAAGATAGAGTTTCATATAAGACTTATCGCAATGAAAGAAGGAACATCCTTGGAAAAACTGGAGGAAGAGGCTGGCAGGATATATTGCACAGggaTGATGGCAGCGGAATTGCATTGAAAACTATCAAGCATGTAAATAAAGGCTGGGGTCAAGGAAGTATATCAAGCATGCAGCCCcagaaaaatgattttcttgatTACTTTGAAAGCAATGGTTAA 2610 0.3774 MDQTSKFIKALFWNNNNPRLAWHFFKRILSSSSSPRYLRSIPVIARILIGARMHREIDELPELVLVSQPLDAARTSLISIVRILASSGHVDKAVSHLKSLRTRFPAMPPPISLYNVLLQSSIEENRPDIVKWLYRDIIVAGVKPETYTFNLLIQSMCDSGRLYDARELFDRMSEKGCQPNEFSIGILVRGFCRAGLTAQGLELLNQRKNDHLSLNKVVYNTLISSFCREDRTEEAEKLLERMREQGLVPDIVTFNSRISALCRVGKILEASRIFRDMQMDEELGLPRPNIITHNIMLKGFCKEGMLEEARALLDTMKKIGNFMTLESYNTWLVGLVRNGKLLEARLVLNEMVAKSIEPNIYSYNIMMDGLCRKHMLSDAKGLMDLMISNGICPDTVTYSTLLHGYCSKGKTFKAKNILQKMISNSCTPNTYTCNILLHSLWKEGRTSEAEEMILKMNEKGYRLDTVTSNILINGLCRSGKLDKAIEIVSKMWTNRPASLCKGNSFASIVNDIKNLSNRSPDVITYTTIINGLCKVGRLEEAKKKFIEMMAKNLHPDSVIYDTFIQSFCKQGNMSSAYRVLKDMERNGCSKTLQTYNSLILGLGSKHQIFEIYGLMDEMRERGVCPDVCTYNNIISSLCDGGKVKDATSILHEMLDKGISPNISSFKMLIKAFCKSNDFGLAFELFEVALNACGHRELLYSLMFNELVAGGQISEARKLFEVSLDRSLGLKNFMYKDLIDQLCKNERLNDANCLLQKLIAKKYEFEHSTFIPVIDGLSKRGDKQQADELAKRMMKLALEDRVSYKTYRNERRNILGKTGGRGWQDILHRDDGSGIALKTIKHVNKGWGQGSISSMQPQKNDFLDYFESNG 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0018 869 Pfam PPR repeat 327 355 IPR002885 -
Sto10g0018 869 Gene3D Tetratricopeptide repeat domain 696 828 IPR011990 GO:0005515
Sto10g0018 869 Pfam PPR repeat family 362 407 IPR002885 -
Sto10g0018 869 Pfam PPR repeat family 625 674 IPR002885 -
Sto10g0018 869 Pfam PPR repeat family 215 263 IPR002885 -
Sto10g0018 869 Pfam PPR repeat family 555 602 IPR002885 -
Sto10g0018 869 Pfam PPR repeat family 144 193 IPR002885 -
Sto10g0018 869 Pfam PPR repeat family 428 477 IPR002885 -
Sto10g0018 869 Gene3D Tetratricopeptide repeat domain 504 586 IPR011990 GO:0005515
Sto10g0018 869 Gene3D Tetratricopeptide repeat domain 205 279 IPR011990 GO:0005515
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 626 660 IPR002885 -
Sto10g0018 869 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 3 834 - -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 280 IPR002885 -
Sto10g0018 869 Gene3D Tetratricopeptide repeat domain 375 503 IPR011990 GO:0005515
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Sto10g0018 869 PANTHER OS02G0132100 PROTEIN 3 834 - -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 591 625 IPR002885 -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Sto10g0018 869 Gene3D Tetratricopeptide repeat domain 587 695 IPR011990 GO:0005515
Sto10g0018 869 Gene3D Tetratricopeptide repeat domain 51 202 IPR011990 GO:0005515
Sto10g0018 869 Gene3D Tetratricopeptide repeat domain 280 374 IPR011990 GO:0005515
Sto10g0018 869 Pfam PPR repeat 288 317 IPR002885 -
Sto10g0018 869 Pfam PPR repeat 519 548 IPR002885 -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 291 318 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 147 181 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 523 557 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 469 493 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 594 627 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 252 279 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 628 662 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 558 589 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 361 395 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 396 430 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 431 464 IPR002885 -
Sto10g0018 869 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Sto10g0018 869 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0018 551 803 Glycosyltransferase AT1G05670 23.438 4.77e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0018 - - cam:101504189 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0018 10 212974 216127 Sto10g0018 10 212974 216127 ECH