Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g0017 ATGAAGCCATTGGATCTTTCTTTTGGAGGGATATCTTGTCCAATTATCCTCCAAATGCATTATTTGCCCCCCTCCCCCTTTTCTTCCAGTGGTAGTTCTCCTTCTTTTAGgccaaaaaatttgaaatgctTTCTTCACCTGTCACCTGAAAAGTTATGGGTAGGTCCTGGGAGCAAGGCAGCGGAGGAGAAACATTTCTTTGACAGTCATCTTGCCCCGTTCTATAGAATTGAACAGGTTTCTGAATTGCTTACAAGTTTGTTTACTTTTGTTTTCTGGTCCTACACTCTTACCTATGGAATGATGTTTGGTGCAAGTCCTTACTCCTTTTCTTACTGCAATAGGGAGATCCAGCCTCTCATTAGTGCTTTTAGTATAAACAAGGCCAAACTTTTTATCTTGGGTGTTTTGGGGCTGTTGTATGGATGCTGGTTGGTTAATAGGACTTGTGTTTTGGGCTGTTGTGTAGGGTGTTGTGTGTTTGTGTTGGACAATGTGGTTGAGCTTGTGATAGCAACAATTCCTGAATTAGAGCATGGTAACCCACCAAGTATCATAACAGATGAAAACATTGAATTACTTTTTGAAATACAGAGAAAGGTTGATGGAATTCGTGTGAATTATTCTGGGTCATTGATATCTCTCCATGACATTTGCTTGAAGCCTCTGGGCCAGGACTGTGCAACTCAAAGCATTCTGCAGTATTATCAAATGGATCCTGAAAATTATGATAACTATGGAGGTGTTGAGCATGCTGAGTATTGCTTTCAGCATTACACATCTTCAGAAACATGCTTTAGTGCATTTAAAGCTCCCCTTGACCCAACCACTGCATTGGGAGGGTTCTCTGGAAACAATTTTTCTGAGGCCTCTGCATTTATTATTACCTACCCTGTCAATAATGCAATTGCTGATGTTGGAGATGGAAATGGAAAAGCAATCACTTGGGAAAaggctttcatcaaattagcaAAGGAGGAACTGCTGCCAATGGTGAAGTCTAGCAATCTTACTTTGTCATTTTCAGCTGAGATTTCAATTGAGGAAGAACTAAAAAGAGAAAGCACTGCAGATGTCATAACAATACTAGTCAGCTATCTTTTAATGTTTGCTTATATATCTGTGACATTGGGAGACACACCTCATCTTTCTACTTTCTACATCTCATCCAAGGTTTTACTTGGTCTTTCTGGGATTGTGCTTGTTATGCTGTCTGTCCTTGGATCAGTTGGATTTTTCAGTGTTATTGGAGTAAAATCTACATTAATCATTATGGAAGTCATTCCTTTCCTAGTTTTGGCTGTTGGAGTAGATAATATGTGCATACTTGTACATGCTATGAAACGGCAATCTACTAGTTTACCAATAGAAGAACGAATATGCAATGCACTGGGGGAGGTTGGACCATCCATTACACTAGCCAGCATATCTGAGATTCTGGCTTTTGCAGTTGGATCTTTCATTTCGATGCCAGCATGCCGTGTTTTCTCTATGTTTGCAGCTCTGGCTGTTCTTCTGGACTTCCTTCTGCAAATTACTGCTTTTGTAGCTCTGGTGACTTTAGACTTTATGAGAGCCGAGGATAACAGGATTGACTGTTTCCCATGCATTGAGGAGGTTCATGCACCAATTCTTGGAGTTTGGGGAGTTAAAATTGTGGTCATTGCCATTTTCGTTGCATTTACTTTAGCAAGCATTGCATTATGCCCAAGAATTGAACGTGGTCTAGAGCAAAAGATTGTTCTTCCTAGGGATTCCTATCTTCAgGGATATTTCAATAACATCTCAGAGTACCTCAGAGTTGGACCACCATTATATTTTGTTGTAAAGGATTACAATTACAGGAGTTTGCTTATGTTGCCATATACACTGCAGATATCTAGGGCTTCTTTGGTACAAGAATCAAGCTACATTGCAAAGCCTGCTGCATCATGGCTCGATGATTTCCTTGTATGGATATCACCAGAGGCTTTTGGTTGTTGTAGAAAATTTATTAATGGCTCTTATTGTCCTCCAGATGATCAGCCACCTTGCTGTTTACCAGATGAAGGACTATGTGGGTTtggtggagtgtgcaaagactGTACAACATGTTTTCGCCACTCAGATTTGGTCAATGATCGTCCATCTACAGCACAATTCAGAGAAAAGCTTCCATGGTTTCTTGATGCGCTGCCATCAGCTGATTGTGCAAAGGGTGGTCATGGGGCCTACACCAACAGTGAATTATTTTATTCCCTTGAGATCTGGCTGAAATGGCTTAGTTTCCTATTAGGTTATGAGAATGGTGTCATACGGGCATCTGAGTTTCGTACTTATCACACTCCACTTAATAGACAAGGTGACTATGTAAATGCTATGCAAGCTGCACGGGATTTTTCCTCAAGAATTTCTGATTCTTTAAAGGATGATATAACAGGTGCTGTTTTCGTTGTTTGTCTGGTTATAACATCCAGCGTGTGGAGTTCAGCAATCATATTAGTTGTGCTGGTCATGATAATTGTGGACCTCATGGGTGTAATGGCAATTCTGGAGATTCAACTAAATGCAGTTTCTGTTGTAAACCTTATCATGTCAATAGGGATTGCTGTTGAGTTCTGCGTCCACATAGCACATGCATTTATGGTATGTTCTGGTGATAGGAATCAACGTGCAACGACAGCATTGTGTACTATGGGTGCTTCTGTATTCAGTGGAATCACACTTACAAAACTAGTTGGAGTTCTTGTCCTTTGCTTTTCAAGATCTGAAATATTTGTGGTATATTACTTCCAGATGTATCTAGCCTTGGTGGTGATTGGCTTTTTGCACGGCCTTGTGTTTCTTCCTGTAGCGTTGAGTTTGTTCGGTCCTCCGTCAAAATACAGAGTCATTAAGGAGGAACCAGAAGACATGCCTCCCGCCTCTTCATAA 2913 0.3986 MKPLDLSFGGISCPIILQMHYLPPSPFSSSGSSPSFRPKNLKCFLHLSPEKLWVGPGSKAAEEKHFFDSHLAPFYRIEQVSELLTSLFTFVFWSYTLTYGMMFGASPYSFSYCNREIQPLISAFSINKAKLFILGVLGLLYGCWLVNRTCVLGCCVGCCVFVLDNVVELVIATIPELEHGNPPSIITDENIELLFEIQRKVDGIRVNYSGSLISLHDICLKPLGQDCATQSILQYYQMDPENYDNYGGVEHAEYCFQHYTSSETCFSAFKAPLDPTTALGGFSGNNFSEASAFIITYPVNNAIADVGDGNGKAITWEKAFIKLAKEELLPMVKSSNLTLSFSAEISIEEELKRESTADVITILVSYLLMFAYISVTLGDTPHLSTFYISSKVLLGLSGIVLVMLSVLGSVGFFSVIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAMKRQSTSLPIEERICNALGEVGPSITLASISEILAFAVGSFISMPACRVFSMFAALAVLLDFLLQITAFVALVTLDFMRAEDNRIDCFPCIEEVHAPILGVWGVKIVVIAIFVAFTLASIALCPRIERGLEQKIVLPRDSYLQGYFNNISEYLRVGPPLYFVVKDYNYRSLLMLPYTLQISRASLVQESSYIAKPAASWLDDFLVWISPEAFGCCRKFINGSYCPPDDQPPCCLPDEGLCGFGGVCKDCTTCFRHSDLVNDRPSTAQFREKLPWFLDALPSADCAKGGHGAYTNSELFYSLEIWLKWLSFLLGYENGVIRASEFRTYHTPLNRQGDYVNAMQAARDFSSRISDSLKDDITGAVFVVCLVITSSVWSSAIILVVLVMIIVDLMGVMAILEIQLNAVSVVNLIMSIGIAVEFCVHIAHAFMVCSGDRNQRATTALCTMGASVFSGITLTKLVGVLVLCFSRSEIFVVYYFQMYLALVVIGFLHGLVFLPVALSLFGPPSKYRVIKEEPEDMPPASS 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g0017 970 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 318 521 - -
Sto10g0017 970 Pfam Sterol-sensing domain of SREBP cleavage-activation 388 538 IPR000731 -
Sto10g0017 970 ProSiteProfiles Sterol-sensing domain (SSD) profile. 358 521 IPR000731 -
Sto10g0017 970 PANTHER PATCHED FAMILY PROTEIN 806 965 - -
Sto10g0017 970 PANTHER PATCHED FAMILY PROTEIN 168 805 - -
Sto10g0017 970 PANTHER PATCHED FAMILY PROTEIN 48 80 - -
Sto10g0017 970 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 168 805 - -
Sto10g0017 970 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 806 965 - -
Sto10g0017 970 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 48 80 - -
Sto10g0017 970 Gene3D Multidrug efflux transporter AcrB transmembrane domain 320 528 - -
Sto10g0017 970 Gene3D Multidrug efflux transporter AcrB transmembrane domain 781 958 - -
Sto10g0017 970 Pfam Patched family 809 949 IPR003392 GO:0016021
Sto10g0017 970 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 807 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g0017 Sto-Chr10 174305 207365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g0017 165 969 Miscellaneous Gene Families AT4G38350 67.377 0.0 1109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g0017 K12385 - gmx:100795551 1246.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g0017 10 174305 207365 Sto10g0017 10 174305 207365 ECH