Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1906 ATGCAAGCTGTGTGGCTGAGGCTTAAGCTTTCCAATTCCAACACCAAGTCTCTTTCCAGACTTTCATCCTAtttatattcttcttcttcttctccgcTACCATTGAATTTGAACTCACTACCATCACCGCGTTCTGCTTCCTCCCCCGCCATCAACTTGTTTTCCTCTCCGTGGTCTGCCTCTCAATGTCGGGGAATCAAAGTATCTGGTTCTGATATTAGAGTTGGAAATATCATTGGAAAACAAGGGCGCATTTACGAGGTTCTTAAAGTAGATCACTCTCATGAAGGAAGAGGAAAAGCTACAATCAAGgtGGAACTTCGTGACATTGGCCAGGGAAACAAGGTAACGCAAAGAATGGGTACTGATGAGGACATTGAAAGGGTCTACGTTCAGGAAAAGACTTTCATGTTTATGTGCATGGATCATGATGGAACTGTAGTATTGATGGACCCTGATACATTGGATCAAATAGAAGTTTCCAAGGACTTGTTCAACAAGGATTGTTTATATCTACGAGATGAAATGAAAGTTAAGGTACAATTTTATGACGACAAACCTTTATCTGCATCGGTTCCAAAACGTGTAACATGTATTGTCAAGGAAGCCGTTGCAGCCACTCCAAGgaataaaaaggTAGTACTGGACAACGGCCTTACAGTTGAAGTTCCGCCTCACATTGTAGCTGGTGATGCCATAGTTGTTAATACAGAGGACGACTCCTACATTGAAAGGGCCAAAGCATAG 747 0.4056 MQAVWLRLKLSNSNTKSLSRLSSYLYSSSSSPLPLNLNSLPSPRSASSPAINLFSSPWSASQCRGIKVSGSDIRVGNIIGKQGRIYEVLKVDHSHEGRGKATIKVELRDIGQGNKVTQRMGTDEDIERVYVQEKTFMFMCMDHDGTVVLMDPDTLDQIEVSKDLFNKDCLYLRDEMKVKVQFYDDKPLSASVPKRVTCIVKEAVAATPRNKKVVLDNGLTVEVPPHIVAGDAIVVNTEDDSYIERAKA 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1906 248 Gene3D - 68 128 IPR014722 -
Ssu9g1906 248 ProSitePatterns Elongation factor P signature. 211 230 IPR013852 -
Ssu9g1906 248 SMART EFP_2 133 188 IPR001059 GO:0003746|GO:0006414
Ssu9g1906 248 SUPERFAMILY Nucleic acid-binding proteins 206 246 IPR012340 -
Ssu9g1906 248 SMART Elong_fact_P_C_2 196 245 IPR015365 GO:0005737|GO:0043043
Ssu9g1906 248 Gene3D - 130 193 IPR012340 -
Ssu9g1906 248 PANTHER ELONGATION FACTOR P (EF-P) FAMILY PROTEIN 33 246 - -
Ssu9g1906 248 PANTHER ELONGATION FACTOR P 33 246 IPR020599 -
Ssu9g1906 248 SUPERFAMILY Nucleic acid-binding proteins 131 193 IPR012340 -
Ssu9g1906 248 Gene3D - 196 248 IPR012340 -
Ssu9g1906 248 Pfam Elongation factor P (EF-P) OB domain 144 188 IPR001059 GO:0003746|GO:0006414
Ssu9g1906 248 Pfam Elongation factor P, C-terminal 201 245 IPR015365 GO:0005737|GO:0043043
Ssu9g1906 248 SUPERFAMILY Translation proteins SH3-like domain 69 129 IPR008991 -
Ssu9g1906 248 Pfam Elongation factor P (EF-P) KOW-like domain 70 125 IPR013185 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1906 Ssu-Chr9 56621314 56634953 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1906 - - gmx:100805422 382.489