Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1897 ATGGAGATTAGGgtatatttgtttgttgtcTTCTCGAAGAGGGGTGGATCGGGTAGTGACCCTTCTGGACTGGTAAACAAACCAAAACCGAAACCAAACCTTGCACGTCTCTCGTCAGAGGCATCCATTCCCACaccatacacatacacatacagaTACACATACTGTTACTCTTCAATCCTTACCATctatctttcaatctatcaatactcactcactcactcacctTCCAATTGCATCTTCTCTTCTCTTGCGAGTCACCTGCCCTACTCCTCATCCAAGGCTTCCAGGTCTTTTCGACTCCCTTCCACTTACTCGCAGGAACTGATGGGGAAGAAAGTCAGAAAGAAGAGCCGAGGTTCTGCCAAGGAGAAGGATGTTACTGCCCATTTGCCAAAAAAGGTTGTGGAATCAAGCAACCCAACTGTCCAGTCTGTTGATGAGGGGGTTTTGGCTGCAAAAGAGACAAATTCTTGCCCTCATCTTGTAAAAGGTGTTGATTTAAACAGATTGTCCAGTAAGATTGGATCTTCTGGATCCATAAGGTGTGAAGATTGTAGGGAAGGTGCGATTGATAGGAGGAGTGGTAAAGGAAAAGGTAAACATGGGAAGAAGAAAGGTGGTACATCATTAGATTCAAAATCTGAGTCAAAATCTATATGGGTTTGTTTGGAGTGTGGTCAATATACCTGTGGAGGCGTGGGGCTACCAGTAACCCCTCAATGCCATGTGGTAGGGCATGCAAGGAAAAATAGGCACCCCTTGGTGGTTCATTTTGACAAGCCTCAACTGTGTTGGTGTTTTCCTTGCAACATGCTTATTCAAGTTGATAAAATTGAGAAAGCTGATGAATCGAGTCATTTTCTATCTGATGTTGTGAAATTGTTGAAAGGACAATCATCAGAAAAATCATCAGTGGATATTGAGGATGTTTCTGTCGGGGATGGCAGTGTTTCTTCAGAAAATAAGTCAAGAGTTCTGTTCACAAATGATTCATATGGACAAGGTGGTTATGTAGTTAGAGGTATGATTAATCTTGGGAATACTTGCTACTTCAATTCAATCATGCAAAATCTGCTGGCTATGAATAGATTGCGGGACAACATTCTAAAGTTAGATTCTCCTGTTGGGCCTCTTATTAGTTCCTTGAAGAAGGTTTTCACTGAAACAAACCCTGAGTCAGgattgaaaaacattataaatcCTAGATCTTTTTTTGGCTGTGTCTGTTCTAAGTCTCCCCAGTTTCGAGGATATCAGCAGCATGACAGTCATGAATTGCTCCGATGTTTACTGGATGGGCTAAGTACTGAAGAACTAGCTGGAAAGAAACAGAATGGTTCTCCCAAGAGAGATGGGACTTCTTCCAATACTTTAGTTGATACTTTATTTGGGGGTCAGATATCTAGTACTGTACGTTGCATAGAATGTGGGCATTTCTCAACAGTGTATGAACCTTTTTTAGATCTTTCACTGCCTGTTCCAACTAAGAAACCTCCAACTCGGAAGGCCCAACAAGTATCTCGAACGAAAAAAGCAAAACTTCCAACAAAAAAAGGTGGAAAGACTCGTGTCAAAGTTAATAGGGATGCTGATCCCTTACCTGTTCAAACTCTATCAAACCCGTTATCCAACCACGAATCATCTTGTCCTGATCAGTCTGTCATATCAGTTGCTGGAGAGATGGGGACCTGTTCTGGTGATTCTACATTATTAGGTTCTGAAGAAATACACAGTTTAGCTGGTAAAGCTGACTTGTCTTCACCTAATTTGGTTACTGCTGGAGAGTCTCAACATATGCAAGTGCTTGACAATGGTGCAATGAAAATGTCAGATGATTTTACATGGTTGGATTATGTGGAAGATGGAACCATGATAGATGAATGTGATTTCATTTCCCAAAAGGAGGATGCTCCAGAGGTACAGGATACTGAGAGCAAAGATGAATGTTTAAATGAATTCCATGTACAGGCCAGCGGTGAATCTAGTGGTCCTGTTTGTTTCCTGAAGGAGGATCAAAACCTAAGACCCAAATTTTCTTCTGCAAATGGGTGGGAAGATGAGGTTCCATTACAAGTTCAAGGTTCAGAAGTGCTGTTACTTCCATACAAAGAAGAAAGTTCCTCAGCTGCTGAGATCATTGGAGGACATGGTGAGGCCTCCTCGTCAGTTTTGGGTGGTGGTCAAGAAGAATTGGAGTTTGATGGCTTTGGTGACTTATTCAATGAGCCTGAAGTTTTTGCTGGGCCTGCTCCTAGACCTTCTTCATGTAGTGAGGTCATGGAAGCTGGTTTTATCATTGGAAGCAACAGCGAGTCTGATCCAGATGAAGTAGATGATACAGATTCTCCTGTCTCTGTAGAGAGTTGCTTGGCACGTTTTATAAAACCTGAGCTTCTCTCAGATGAAAATGCTTGGCATTGTGAAAACTGTTCAAAAGTTCTCCAACGTCAAaagattgaagaaaaaaagcaGGCAAGAGCTGTATCTGATGGAAATGAGACTGGAGGTCATGATGAACCATGGCATGCAGCTAACTCTTGTTCTGTTAAAGTCAGAACTATTGGAAATGGGgacataaaaaatgacaaaaatatagaaagttTGGTTTCATGTGTTAGACATGGCACAGAGCTTGAAAATGGACAAAGAGATGAGCTTAGTTTAATTGTTAATGAAAGGGATAGTGAGGCATTTGAAATGGAAGATACACCTAATGATGAATTACAGTCTTCAGGGTTTCATAATGCTTGCAATGAAGAAAGCTGCAGTCATTTAGCTGCTGATTCTAGTGTTACTGAAAATATCCGAAGAAGAAATTCTCCGTTGTTAGGTAATGATAACAATGACTCAGAAGAGGCCGACTCCAAGAGTGTGAAAGTGAAGAGGGATGCAACTAAGAGGGTCCTCATTTATAAAGCTCCGCCTGTCTTGACCATTCATTTGAAGAGATTCAGCCAAGATGCCCGTGGTCGCTTAAGCAAATTAAATGGCAATGTCAATTTCAGAGAAACAATGGATGTTAGACCATATATTGATCCCAGGTAA 3048 0.3983 MEIRVYLFVVFSKRGGSGSDPSGLVNKPKPKPNLARLSSEASIPTPYTYTYRYTYCYSSILTIYLSIYQYSLTHSPSNCIFSSLASHLPYSSSKASRSFRLPSTYSQELMGKKVRKKSRGSAKEKDVTAHLPKKVVESSNPTVQSVDEGVLAAKETNSCPHLVKGVDLNRLSSKIGSSGSIRCEDCREGAIDRRSGKGKGKHGKKKGGTSLDSKSESKSIWVCLECGQYTCGGVGLPVTPQCHVVGHARKNRHPLVVHFDKPQLCWCFPCNMLIQVDKIEKADESSHFLSDVVKLLKGQSSEKSSVDIEDVSVGDGSVSSENKSRVLFTNDSYGQGGYVVRGMINLGNTCYFNSIMQNLLAMNRLRDNILKLDSPVGPLISSLKKVFTETNPESGLKNIINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEELAGKKQNGSPKRDGTSSNTLVDTLFGGQISSTVRCIECGHFSTVYEPFLDLSLPVPTKKPPTRKAQQVSRTKKAKLPTKKGGKTRVKVNRDADPLPVQTLSNPLSNHESSCPDQSVISVAGEMGTCSGDSTLLGSEEIHSLAGKADLSSPNLVTAGESQHMQVLDNGAMKMSDDFTWLDYVEDGTMIDECDFISQKEDAPEVQDTESKDECLNEFHVQASGESSGPVCFLKEDQNLRPKFSSANGWEDEVPLQVQGSEVLLLPYKEESSSAAEIIGGHGEASSSVLGGGQEELEFDGFGDLFNEPEVFAGPAPRPSSCSEVMEAGFIIGSNSESDPDEVDDTDSPVSVESCLARFIKPELLSDENAWHCENCSKVLQRQKIEEKKQARAVSDGNETGGHDEPWHAANSCSVKVRTIGNGDIKNDKNIESLVSCVRHGTELENGQRDELSLIVNERDSEAFEMEDTPNDELQSSGFHNACNEESCSHLAADSSVTENIRRRNSPLLGNDNNDSEEADSKSVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGNVNFRETMDVRPYIDPR 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1897 1015 MobiDBLite consensus disorder prediction 929 960 - -
Ssu9g1897 1015 MobiDBLite consensus disorder prediction 496 523 - -
Ssu9g1897 1015 MobiDBLite consensus disorder prediction 823 843 - -
Ssu9g1897 1015 Gene3D Cysteine proteinases 329 527 - -
Ssu9g1897 1015 CDD Peptidase_C19 944 1014 - -
Ssu9g1897 1015 SMART Zf_UBP_1 211 264 IPR001607 GO:0008270
Ssu9g1897 1015 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 112 1013 - -
Ssu9g1897 1015 Pfam Zn-finger in ubiquitin-hydrolases and other protein 183 276 IPR001607 GO:0008270
Ssu9g1897 1015 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 342 357 IPR018200 GO:0004843|GO:0006511
Ssu9g1897 1015 ProSiteProfiles Zinc finger UBP-type profile. 157 293 IPR001607 GO:0008270
Ssu9g1897 1015 Gene3D Cysteine proteinases 868 1015 - -
Ssu9g1897 1015 SUPERFAMILY Cysteine proteinases 340 1013 IPR038765 -
Ssu9g1897 1015 Gene3D Cysteine proteinases 744 830 - -
Ssu9g1897 1015 MobiDBLite consensus disorder prediction 193 213 - -
Ssu9g1897 1015 MobiDBLite consensus disorder prediction 929 949 - -
Ssu9g1897 1015 MobiDBLite consensus disorder prediction 504 522 - -
Ssu9g1897 1015 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 341 1015 IPR028889 -
Ssu9g1897 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 293 IPR013083 -
Ssu9g1897 1015 SUPERFAMILY RING/U-box 158 275 - -
Ssu9g1897 1015 Pfam Ubiquitin carboxyl-terminal hydrolase 342 1013 IPR001394 GO:0004843|GO:0016579
Ssu9g1897 1015 MobiDBLite consensus disorder prediction 823 838 - -
Ssu9g1897 1015 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 112 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1897 Ssu-Chr9 56492547 56496391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1897 342 490 Miscellaneous Gene Families AT4G31670 27.607 1.40e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1897 K11844 - gmx:100780952 1569.67