Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1894 ATGGCTCCCAAACAAAGAAGCCAGTTGTCGAAACAAGGAGTTCCTCTTGCTGATTTACATGTACAAGAGGTTGTTCACAGGCAGTCTCATACTATTAGTCCTTGTAGCAAGCCTAAGCCACAGTTCGATCCCACTTTTCTGAATGATGCCTATGAAATGTGCAGAAATATCTGCGCCGAATATGCCAAGACCTTCTATCTAGGAACCTTGCTTATGACTGAAGAAAGACAGAAAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACGGATGAGCTGGTTGATGGTCCTAACGCTGTGCATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGATAGATTGCACGACATTTTCAATGGACATCCCTATGATATGCTTGATGCTGCTCTCACTGATACCGTCTCCAAGTTTCCCTTGGATATTAAGCCTTTCAGGGATATGATACAAGGTATGAGAATGGATACAAGGAAATCCCGATACAACAATTTCCAAGAGTTATATCTCTACTGCTACTATGTGGCGGGAACTGTTGGCTTAATGAGTGTTCCAATAATGGGTATTGCCCAGGAGTCTGTCATCCCTGTTCAAAGTGTATATGATGCTGCACTATATCTGGGTATAGGAAATCAACTCACAAACATTCTTAGAGATGTGGGGGAGGATGCATTAAGAGGTAGAGTGTACCTTCCCCAAGACGAACTAGCCCAGTTTGGTTTGTGTGACAAGGATGTTTTTTCAAGAAAGGTCAGTGAAAGATGGAGAAAGTTTATGAAACATCAGATTACAAGGGCAAGATTCTACTTCAACCGGGCAGAAGAAGGAGTTTCTCAGCTCGAAAAGGCCAGCCGTTGGCCGGTTTGGTCCTCGTTAATATTGTATCGTAAGATCCTGGATGCAATTGAAGACAACGATTACGACAATTTGACTAAACGAGCTTATGTGGGACGAACTAAGAAATTTTTGACGTTGCCTTTAGCTTATGCTAGATCTCTCTCAAATCCCCAAACGAAATTTCGTCCTTCTTTAACGAGGTTTATCTAG 1041 0.4256 MAPKQRSQLSKQGVPLADLHVQEVVHRQSHTISPCSKPKPQFDPTFLNDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAVHMSSAVLDRWEDRLHDIFNGHPYDMLDAALTDTVSKFPLDIKPFRDMIQGMRMDTRKSRYNNFQELYLYCYYVAGTVGLMSVPIMGIAQESVIPVQSVYDAALYLGIGNQLTNILRDVGEDALRGRVYLPQDELAQFGLCDKDVFSRKVSERWRKFMKHQITRARFYFNRAEEGVSQLEKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRTKKFLTLPLAYARSLSNPQTKFRPSLTRFI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1894 346 ProSitePatterns Squalene and phytoene synthases signature 2. 205 230 IPR019845 GO:0016765
Ssu9g1894 346 SFLD Phytoene synthase like 48 330 IPR044843 GO:0004311
Ssu9g1894 346 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 5 337 - -
Ssu9g1894 346 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 5 337 - -
Ssu9g1894 346 ProSitePatterns Squalene and phytoene synthases signature 1. 169 184 IPR019845 GO:0016765
Ssu9g1894 346 Pfam Squalene/phytoene synthase 61 316 IPR002060 GO:0009058
Ssu9g1894 346 SUPERFAMILY Terpenoid synthases 49 332 IPR008949 -
Ssu9g1894 346 CDD Trans_IPPS_HH 52 319 IPR033904 GO:0004311
Ssu9g1894 346 Gene3D Farnesyl Diphosphate Synthase 43 325 IPR008949 -
Ssu9g1894 346 SFLD Isoprenoid Synthase Type I 48 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1894 Ssu-Chr9 56460628 56463189 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1894 K02291 - gmx:100782394 632.098