Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1892 ATGTGCACAGTGTCAAGTTCCATCCTTGTGTGGTGGCCTTCTTCAATATCATTCCTTAGTTGTTATCCGAAAACGAGCGCTGGCAGTAGCATAAGCCCCGCCACTTGTGCCATAACCGTAGCAGCTACGTCTAAAGATGTGTGGACCCGAACATCGCCGTCTTCCTCTCCCAACACCAACAGCAAAAGGCAACGTGGTAGTAGAAGGCAGCAACAACCTGCGTACTTGGACCGCAGCGTGGACATGGAAGAGCTATTAGCGGCAATCGGGCAGACCCAGAACGAGGAAGAACTGTGTGCGGTGATGTCTCCCTACAGCGGCAGGCAGCTCTCTATGCGGTTCATGGTTTCCCTGTTGTCCCGCGAACCCGATTGGCAACGCGCCCTAGCCCTTCTCGATTGGATCAACGACAAAGCCCTTTATTCTCCCTCCCTCTTCGCCTACAACGTCGTTCTCCGCAACGTCCTTCGGGCCAAGCAATGGCACCTCGCACACGGCCTGTTCGACGAAATGCGCCAAAAGGGTCTTTCCCCCGATAGGTACACTTACTCCACCCTCATCACTTCTTTCGGGAAACACGGCTTGTTTGATTCCTCTCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTTCCCGGCGACCTTGTCCTCTATAGTAATCTGATTGAGCTTGCCCGCAAGCTGTGCGATTATTCCAAGGCCATTTCCATCTTCGCCAGGCTGAAAGCCTCCACTTTTACCCCCGACCTCATTGCGTATAACTCCATGATTAATGTCTTCGGAAAAGCCAAGCTCTTCCGCGAGGCTCGACTTCTTCTTCAAGAGATGAGGGACAATGACGTTCACCCCGACACCGTCAGCTATTCCACGCTTCTTGCCGTCTATGTTGACAACCAAAAGTTTGTGGAAGCACTCTCTGTATTCTCTGAAATGAATGAAGCCAAATGCCCCCTTGATCTCACCACATGTAACATCATGATTGATGTCTACGGCCAGCTTCACATGGCCAAGGAAGCCGACCGCCTCTTCTGGAGCATGAGGAAGATGGGGATTCAACCCAATGTGGTCAGCTATAATACGCTCTTGAGGGTTTATGGAGAGGCTGAGCTATTCGGGGAAGCCATCCATCTCTTTCGTttgatgcaaagtaaggatGTACAGCAGAACGTCGTCACCTACAACACTATGATTAATATCTATGGTAAGTCTCTTGAGCACGAGAAGGCTACCAATCTCATTCAAGAAATGAAGAATAGGGGTATTGAACCCAATGCCATCACTTATTCAACCATAATATCTATATGGGAAAAGGCAGGGAAGCTGGACCGGGCTGCCAtcttgtttcaaaaattaaggAGTTCGGGAGTTCGAATTGATGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGGCGGGTTTAGTTGCTCATGCTAAGCGTCTACTTCATGAGCTCAAGCGGCCGGACAACATTCCCAGGGAGACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTAGCTGGGTTTTCCGGCAGGCTTTTGATGCTGGAGAGGTCAAAGATATATCTGTGTTTGGGTGCATGATTAATCTTTTCTCTAGGAACAAAAAGTATGGCAATGTAGTTGAAGTGTTTGAGAAGATGAGAGAGGTGGGATATTTCcctgattctgatgttattgcTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCAGATGCTTTATATAGACAGATGCATGAAGAAGGGTGTGTTTTTCCAGACGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAGGATTTCATGATGGTAGAGTCCTTGTTTGAGAAGCTAGATTCCAATCCTAATATCAACAAGAAGGAGTTGCATCTTGTTGTTGCTAGCATCTATGAGAGAGCAGATAGACTTAATGATGCTTCCCGAATCATGAATAGGATAAATCAAAAAGCAAACAGAAGTCATGATCATGCTTAG 2007 0.4649 MCTVSSSILVWWPSSISFLSCYPKTSAGSSISPATCAITVAATSKDVWTRTSPSSSPNTNSKRQRGSRRQQQPAYLDRSVDMEELLAAIGQTQNEEELCAVMSPYSGRQLSMRFMVSLLSREPDWQRALALLDWINDKALYSPSLFAYNVVLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITSFGKHGLFDSSLFWLQQMEQDNVPGDLVLYSNLIELARKLCDYSKAISIFARLKASTFTPDLIAYNSMINVFGKAKLFREARLLLQEMRDNDVHPDTVSYSTLLAVYVDNQKFVEALSVFSEMNEAKCPLDLTTCNIMIDVYGQLHMAKEADRLFWSMRKMGIQPNVVSYNTLLRVYGEAELFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKSLEHEKATNLIQEMKNRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERAGLVAHAKRLLHELKRPDNIPRETAIAILARAGRIEEASWVFRQAFDAGEVKDISVFGCMINLFSRNKKYGNVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFMMVESLFEKLDSNPNINKKELHLVVASIYERADRLNDASRIMNRINQKANRSHDHA 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1892 668 MobiDBLite consensus disorder prediction 48 74 - -
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Ssu9g1892 668 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 36 661 - -
Ssu9g1892 668 TIGRFAM PPR: pentatricopeptide repeat domain 147 179 IPR002885 -
Ssu9g1892 668 TIGRFAM PPR: pentatricopeptide repeat domain 252 285 IPR002885 -
Ssu9g1892 668 TIGRFAM PPR: pentatricopeptide repeat domain 391 425 IPR002885 -
Ssu9g1892 668 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Ssu9g1892 668 TIGRFAM PPR: pentatricopeptide repeat domain 567 596 IPR002885 -
Ssu9g1892 668 TIGRFAM PPR: pentatricopeptide repeat domain 181 212 IPR002885 -
Ssu9g1892 668 TIGRFAM PPR: pentatricopeptide repeat domain 528 560 IPR002885 -
Ssu9g1892 668 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Ssu9g1892 668 TIGRFAM PPR: pentatricopeptide repeat domain 356 388 IPR002885 -
Ssu9g1892 668 Gene3D Tetratricopeptide repeat domain 373 499 IPR011990 GO:0005515
Ssu9g1892 668 Gene3D Tetratricopeptide repeat domain 500 668 IPR011990 GO:0005515
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Ssu9g1892 668 Gene3D Tetratricopeptide repeat domain 226 372 IPR011990 GO:0005515
Ssu9g1892 668 Pfam Pentatricopeptide repeat domain 318 367 IPR002885 -
Ssu9g1892 668 Pfam PPR repeat 528 556 IPR002885 -
Ssu9g1892 668 Pfam PPR repeat 567 592 IPR002885 -
Ssu9g1892 668 Pfam PPR repeat 461 488 IPR002885 -
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Ssu9g1892 668 Gene3D Tetratricopeptide repeat domain 91 225 IPR011990 GO:0005515
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Ssu9g1892 668 PANTHER OS03G0856100 PROTEIN 36 661 - -
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Ssu9g1892 668 Pfam PPR repeat family 143 190 IPR002885 -
Ssu9g1892 668 Pfam PPR repeat family 248 292 IPR002885 -
Ssu9g1892 668 Pfam PPR repeat family 389 433 IPR002885 -
Ssu9g1892 668 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1892 147 611 Glycosyltransferase AT1G05670 23.355 2.03e-43 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1892 - - gmx:100782934 1159.82