Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1890 ATGGTTTCCAAAAGCAAAAGGGTGAGGGATGTAGCACTCTCCTCCATGTTACTACTGCTACTGTTGGTTGGTTTTGCAAACTCAGATTTAGCCAAAGACAGAGAAGAGTGTGCAGACAAGCTAATTGGGCTAGCCAGCTGTGTTCCTTACGTTGGTGGTGAAGCCAAAACCCCCACCATAGACTGCTGCAGTGGCCTCAAAGTGGTCCTTGACCAGAGCAAGAAATGCATCTGCATCCTCATCAAAGATCGCAATGACCCCAATCTTGGCATCAAGATCAATGCCACTCTCGCTATCCACCTCCCAGCTGCTTGCCACGCACCTGCTAATATAACTCAGTGCGTAGATCTTTTGCATTTAGCACCTAACTCTCCTGAAGCTAAGGTGTTTGAGGGATTCGAAAACTCCACCAAAACAAACACTTCCACCCCAGTTTCCAGTgGTGGTGCTGAGAAGGGATCGAGCCCAAGTGCTCAGGAAAAGAGTGATGCCACTGCAGTGGCACACCTGCTTTGCTCTATCTTACCGTTTCTCTTCCTCCTTGTTTGA 549 0.4827 MVSKSKRVRDVALSSMLLLLLLVGFANSDLAKDREECADKLIGLASCVPYVGGEAKTPTIDCCSGLKVVLDQSKKCICILIKDRNDPNLGIKINATLAIHLPAACHAPANITQCVDLLHLAPNSPEAKVFEGFENSTKTNTSTPVSSGGAEKGSSPSAQEKSDATAVAHLLCSILPFLFLLV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1890 182 MobiDBLite consensus disorder prediction 132 159 - -
Ssu9g1890 182 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 12 174 - -
Ssu9g1890 182 SMART aai_6 37 114 IPR016140 -
Ssu9g1890 182 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 12 174 IPR043325 -
Ssu9g1890 182 Gene3D - 34 114 IPR036312 -
Ssu9g1890 182 CDD AAI_LTSS 44 106 - -
Ssu9g1890 182 Pfam Probable lipid transfer 28 114 IPR016140 -
Ssu9g1890 182 MobiDBLite consensus disorder prediction 133 159 - -
Ssu9g1890 182 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 36 115 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1890 Ssu-Chr9 56440565 56441317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1890 15 177 Acyl Lipid Metabolism Gene Families AT1G55260 49.123 2.89e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1890 - - pvu:PHAVU_001G268300g 282.337