Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1889 ATGAGTGCAGAGATTGATTCAACTTCTGCTCCTGAACCACACAAAATGTCTGGACCTTCATCTGCAGCAACTACTAGTGGCCAAAAGCACTCTATATTTGCTGCCAAATCAGGATTTGTGATCCCTAAAAACAAATTGTCAGGGTCACTGGTCCCTATTTTCCGAGGGGCTAAAAAACACGGGGTCACTGGAGCCATCAATGAAGAAAGTTCAAAACAAATTGAGAGGAGATCAAAATGGGGACCTGATCTGACACAAGGTGCAACTGTCAGGAGGGGAAAGGCTTTAGCTTTGCAGATTCGAGTGGATCAAATAACAAAGCAGTTGGAATCAGAAAAACTGGAAGTTGGGGACACTCAGAACTTGCCATTGGTGGCTGGGAATGCAGATCAAAGCAAACCTGGCCCTCAAATTAACAGCAAGAAGTCAGAAATGCTCGAACTTGAAAAGTGGGAAGCGATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCACGTGGTTTTAAACCATTGTTAAAAGAAGCCAACATTCCTTTGCCTGTCCAAGAATATCCTGGGTACAATTTTGTTGGTCTAATATATGGGCCTGAAGGTGATAATCAAAAACGACTAGAAAAGGAAACTGGTGCCAAGATAAAAATTCACGGAACCACTGCAGACACAGGAGAGAAAGGTGAAATTAAACCTGGAACTGATATCCAGTGCAGTTACAAAGAGATGCATGTTAACATATCAGCTGATAGTTTTGATAAAGTGGATGCAACAATGTCAATCATTGAACTGCTAATTACCTCTGTAACTGGGAATTTAGCTGCTGGTTCTACACCCTCTATATCAGTTTCTGGGGACAGCACTAATGTCCTGAGTCAAAGCCAAGAGGGCCCCTGGTCTCATGCAGATTCTTTATCTCTGGAAAACCAGGCCGTGTTGCAACCAGTAGCTGTTACACAAATGCATGGAGATAACTACCAATACTCTGGTCCATGGTTTTCAGTGGTTCCATCTCATACACCTGTGTTTGCTTCGTCTGGCAATGTAGCCCCCCCAAATCCACCAGGTCTTGCTAGAACTCCCCATTTTCCATCACAAACTTCAAACATGACTTCAACTTTTGGTGCTCGATCTGTACCTGTTTCTGGATTTCAGCCGATTATTCCAAATCAAAATGTTTCTGTGCAAGCACCACCACCAAGACAGATTTTACAGTATTCACATATGACTCAGGCTAGTTCTTTGGGTCACATTGGCCCCCCAAGAAATCCTTCTATAATATCTGTACAGAATTTGTCAACTCCAACAAATGCTTCACTTTCATTTCCTGTTACCTTAAGCCAACCAACGCCAATAGGACAACTTCACACATCAGTGTCTTCAATGCATCTACCTTTATCTGGTATATCACCATCACCAATACCTAACCAGCCATTGACCCATCTTGGGGTCTCTTCTGGCCAGAATGAAGCCCCTGTCACTGTTAAAATGTCTGTAGGTCCCAGCAATATGGGGCCAATGGCTCCACCAGTGGTTCCACCTGTGAGACCTGTTTCTCTACATCAACAACCGGATGTTGCATTTAAGCCACCACAGTCAAATATGTCCATGATGCCGCGATCTGCCACCTTTCCTCCACATCAAGTAGGAATTTCCCCTGGACCACCATCTTCTTTGAGACCAATGCCTGTACCAATAGCTGCACCTGCACATTCATCTGTAAACCATTTATCGGGACCTGTTTCATTTCCTTCACCTGGAATGTCCTCTTCACTTCCATTACCTCAGCAAGCAGGAATACCTAATTCTGCTTCTGGGGTTGCACCTTATCACACCCATGTAAAACCACCAGTCTTGGTGACATCAAAATCTggaaattttacttttcaatcaCATCCGCCCCATGCAGACTATGGTCAAATTGTTTCTGGACCAAACAGTCAAGCAGGTGCTACACAAGAGCCACCTTCTGGTCCACGGCCTCCACCATTTGGGTTTGCTGTGCCTGATCGGCCTCTTCAAATCTTTCCAAGGACACAATTCCTGGATCAAGTGGATCAAATCGTTCCCTTTGGGGGAAGATCAGGTTCCATCTCAAACTCAATTCCACCAACTAGACATGCTGCATTTCCATATGCTGGTCAACCCACACCTAGATCTCCAGTCCCACAAATGGGTATGAAGAACTTCATTTCTGCCCCTCAAATGCCAAACTTGACCAGTGCTGGTGCCCAAAGAGGCATGCCTAGTCGACAAAGCTATCCTGCTCAGATGGTACGGCCAGATATCCCAATGCCTCTGAATCACAAGTTTGTCAACAATCCCTCCATGGCTTCTGGTAAGCTACCATATCCTGCGGACCAAATTTATGATCCCTTTTCACCCACTTCTGCACCTCCACAACAGAAAGGTAATCCTGGAAAGTGA 2424 0.4443 MSAEIDSTSAPEPHKMSGPSSAATTSGQKHSIFAAKSGFVIPKNKLSGSLVPIFRGAKKHGVTGAINEESSKQIERRSKWGPDLTQGATVRRGKALALQIRVDQITKQLESEKLEVGDTQNLPLVAGNADQSKPGPQINSKKSEMLELEKWEAIGEILKLDPSYKPPRGFKPLLKEANIPLPVQEYPGYNFVGLIYGPEGDNQKRLEKETGAKIKIHGTTADTGEKGEIKPGTDIQCSYKEMHVNISADSFDKVDATMSIIELLITSVTGNLAAGSTPSISVSGDSTNVLSQSQEGPWSHADSLSLENQAVLQPVAVTQMHGDNYQYSGPWFSVVPSHTPVFASSGNVAPPNPPGLARTPHFPSQTSNMTSTFGARSVPVSGFQPIIPNQNVSVQAPPPRQILQYSHMTQASSLGHIGPPRNPSIISVQNLSTPTNASLSFPVTLSQPTPIGQLHTSVSSMHLPLSGISPSPIPNQPLTHLGVSSGQNEAPVTVKMSVGPSNMGPMAPPVVPPVRPVSLHQQPDVAFKPPQSNMSMMPRSATFPPHQVGISPGPPSSLRPMPVPIAAPAHSSVNHLSGPVSFPSPGMSSSLPLPQQAGIPNSASGVAPYHTHVKPPVLVTSKSGNFTFQSHPPHADYGQIVSGPNSQAGATQEPPSGPRPPPFGFAVPDRPLQIFPRTQFLDQVDQIVPFGGRSGSISNSIPPTRHAAFPYAGQPTPRSPVPQMGMKNFISAPQMPNLTSAGAQRGMPSRQSYPAQMVRPDIPMPLNHKFVNNPSMASGKLPYPADQIYDPFSPTSAPPQQKGNPGK 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1889 807 Gene3D K Homology domain, type 1 170 294 IPR036612 GO:0003723
Ssu9g1889 807 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 24 801 - -
Ssu9g1889 807 ProSiteProfiles Type-1 KH domain profile. 190 216 - -
Ssu9g1889 807 Pfam KH domain 190 222 IPR004088 GO:0003723
Ssu9g1889 807 MobiDBLite consensus disorder prediction 793 807 - -
Ssu9g1889 807 MobiDBLite consensus disorder prediction 631 665 - -
Ssu9g1889 807 SMART kh_6 173 266 IPR004087 GO:0003676
Ssu9g1889 807 MobiDBLite consensus disorder prediction 769 807 - -
Ssu9g1889 807 PANTHER RNA-BINDING PROTEIN RELATED 24 801 IPR045071 -
Ssu9g1889 807 MobiDBLite consensus disorder prediction 1 29 - -
Ssu9g1889 807 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 270 IPR036612 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1889 K13095 - gmx:100777227 1310.43