Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1884 ATGGACTTGGTGGAATTGGAGGCGGTGGAAGGGCTCCGATGGACGTGGAATTCGTGGCCGGCGGAGGGGGGCGGGAGCAGTCTGATAATCCCTCTCAGCATAATGTGCACTCCCCTGATGCAAAGCAGTGGCAGTGAGGGTGAGTTCCCCCTTCTCCCCTATGATCCCCTCCTCTGCTCCCGATGCGGCGCCGTTTTGAACCCATACGCACGCCTCGACTACCAATCCCGCATCTGGCACTGCCCCTTCTGCTTCCTCCGCAACCCCTTTCCCCGCCCCATCGCGGACACAAATCTCCCCGCCGAGCTCTTCCCCACCTACAGCACCGTCGAGTACTCTTCTCCCTCTCCGTCTCCGTCtccccctccccctccccccGCCCTCGTCTTTCTCCTCGATCTCTCCTCTCCCGAGGACGAACTCCGACACCTCAAGAAccaccttctcctcctcctccaccactTGCCCGACCACGCTCTCGTCGCCCTCCTCACCTTCGATTCCATGGTCTATCTCCACCATCTCGGATATTCCCACTGTTCATCACTCATCCTCTTTCACGGCAACCGCCAACTCTCCTCCAATCAGATCCGGCAGTTCCTTAACATTAGCCGCCCCCACCCGCTGCATCTCGGACAAACACCCAAGCAGGGTTTTCTGTTGCCAATTTCCGAATGCGAATTCGCTATCACTGCTGCAATTGAAGAGATCCATTCTACGTCCAAGTTCACCTCCCACACTCGCCCCCCAAGGTGCACCGGGGCTGCAATATCCGTCGCGCTTGGACTTTTAGAGTGTTGCCTAATCAATGCAGGCTCCAGGATCATGCTCTTCACCTCTGGGTCTGCTACTCTCGGACCCGGAATCGTTGTTGATTCTGATCTCCGCCAACCCATCAGAACCCACCATCACATCTTCAACGCCCAAGCAAGACACTATGCCAAGTCTTGCACCTTCTATAAGCAACTCTCCAAGAGGCTGTCCGATGCATCTGTTGTTCTTGATCTCTTCGCTTGTTCCCTTGACCAAGTTGGAGCGGCAGAGCTTCGAGAACCCGTTGAGCGCTCTGGTGGGTTCATGATTCTCTCTGACTCTTTTGACTCCGAACAATTCAAGAAATGTCTCAGGCATATATTCAAATGTGACGACCAGGGCCATTTGGAGATGAATTTTGATGCAACTATTGAAATAGTCACCACCAAAGATGTGAAAATCTGTGGAGCGCTTGGTCCTTGTGTCTCTCTTCAGAGAAAGAACAGCTTAGTGAGTGAGGCTGAGGTTGGACAAGGTGGTACCTGTGTGTGGAAGTTAAACACGCTCACCCACAAAACTTGCAttgcctttttctttcaagtgaATCGTGAGCAGAAAATTCAACCCGGCTCTGCATTTTTGATTCAGTTTATAACGCGATACAGGCAGGGAAACATGGGACACCGAAAAAGAGTGACAACGGCTGCAAGACGATGGGTGGCAAACCATTCTGCAGATATTGCTGCCGGGTTTGATCAAGAAGCCGCGGCTGCAGTTATGGCAAGACTTGCCATTCTCCGGGCAGAGACATGCCATGCCCGTGATGTCATTAGATGGCTGGATGACACACTTATACGTTTTACTTCCAAGTTTGGGGACTATGTGCCAGAGGATCCATCTTCTTTCCGCCTATCCACCAACTTTTCCCTTTATCCCCAGTTTATGTTCCACTTGAGGCGATCTCAATTCATTGATGTCTGTAACACTACTCCTGATGAAACTGCATTTTTCCGGCTTGTGCTGAACCGTGAGGGAGTAGTAGGCTCTCTTATAATGATTCAACCTACACTTTTCCAATATTCGTTTGATGGGCCACCTGTTCCAGTACTTCTTGATATTCGTTCTGTTTCTCCAGATTTTATCTTGCTCTTTGATTCTTTCTTCTATGTGGTGATTCATTATGGGTCCAAGATCGCCCAGTGGAGGAAGCTGGGTTATGATAAGGACCCCAATCATGAGAACTTCAGAAAGCTGTTGGAAGCCCCAGAACTGGATGCAGAGCAATTGGTGGCTGAACGGATTCCAGTGCCAAGGATTATAAGATGTGACCAGCATAGTAGTCAGGCTAGATTTCTTCTTGCCAAGTTGAATCCATCTGTTACTCAAAATTCAACCTACACAGAGGGTTCGGATATTATATTTACCGATGACCTGAGCTTGGAAGTTTTTCTAGATCAGTTGCAGGTACTGGCAGTACAAAGCTGA 2238 0.4879 MDLVELEAVEGLRWTWNSWPAEGGGSSLIIPLSIMCTPLMQSSGSEGEFPLLPYDPLLCSRCGAVLNPYARLDYQSRIWHCPFCFLRNPFPRPIADTNLPAELFPTYSTVEYSSPSPSPSPPPPPPALVFLLDLSSPEDELRHLKNHLLLLLHHLPDHALVALLTFDSMVYLHHLGYSHCSSLILFHGNRQLSSNQIRQFLNISRPHPLHLGQTPKQGFLLPISECEFAITAAIEEIHSTSKFTSHTRPPRCTGAAISVALGLLECCLINAGSRIMLFTSGSATLGPGIVVDSDLRQPIRTHHHIFNAQARHYAKSCTFYKQLSKRLSDASVVLDLFACSLDQVGAAELREPVERSGGFMILSDSFDSEQFKKCLRHIFKCDDQGHLEMNFDATIEIVTTKDVKICGALGPCVSLQRKNSLVSEAEVGQGGTCVWKLNTLTHKTCIAFFFQVNREQKIQPGSAFLIQFITRYRQGNMGHRKRVTTAARRWVANHSADIAAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGDYVPEDPSSFRLSTNFSLYPQFMFHLRRSQFIDVCNTTPDETAFFRLVLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSVSPDFILLFDSFFYVVIHYGSKIAQWRKLGYDKDPNHENFRKLLEAPELDAEQLVAERIPVPRIIRCDQHSSQARFLLAKLNPSVTQNSTYTEGSDIIFTDDLSLEVFLDQLQVLAVQS 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1884 745 Gene3D - 6 488 - -
Ssu9g1884 745 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 606 744 IPR036180 -
Ssu9g1884 745 Pfam Sec23/Sec24 beta-sandwich domain 391 491 IPR012990 -
Ssu9g1884 745 SUPERFAMILY beta-sandwich domain of Sec23/24 3 502 - -
Ssu9g1884 745 SUPERFAMILY Zn-finger domain of Sec23/24 49 120 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Ssu9g1884 745 Gene3D Severin 605 709 IPR029006 -
Ssu9g1884 745 SUPERFAMILY vWA-like 125 379 IPR036465 -
Ssu9g1884 745 Pfam Sec23/Sec24 trunk domain 123 376 IPR006896 GO:0006886|GO:0006888|GO:0030127
Ssu9g1884 745 Gene3D von Willebrand factor, type A domain 125 389 IPR036465 -
Ssu9g1884 745 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 745 - -
Ssu9g1884 745 Pfam Sec23/Sec24 helical domain 503 599 IPR006900 GO:0006886|GO:0006888|GO:0030127
Ssu9g1884 745 Gene3D - 53 109 - -
Ssu9g1884 745 Pfam Gelsolin repeat 617 703 IPR007123 -
Ssu9g1884 745 SUPERFAMILY Helical domain of Sec23/24 503 605 IPR036175 GO:0006886|GO:0006888|GO:0030127
Ssu9g1884 745 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 745 IPR037364 -
Ssu9g1884 745 Pfam Sec23/Sec24 zinc finger 56 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Ssu9g1884 745 Gene3D Sec23/Sec24 helical domain 500 742 - -
Ssu9g1884 745 CDD Sec23_C 595 715 IPR037550 GO:0030127|GO:0090114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1884 Ssu-Chr9 56376716 56379096 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1884 K14006 - gmx:100784000 1227.23