Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1883 atgatgaagaagaagaagcaggtGCCGGAGTGGCTGAATAGTTCTATGTGGTCCTCCCCCTCCGACCACCGTCGCTTTGACCCACCCGAACctccctctcctcctcctccgccTCTTCCCGTCTCTGTCAGAGAAGATCCCCCGACAATCCCAACCAACCACAATGcatctccttcttcttcacccCTTTCTTCTGCTTCTGTTTCTGTTTTCTCATCCGCCGATGACATCTCCCGCCTGGGCCACGCTCACGGTCAGGCTCAGGCTCAATTGTTGGCCGAGTTATCTAGGAAGGTGATAGACATGCGCGAGTTGAGGAGAGTCGCTTCTCAAGGTATAACTGATGCTGCCGCCCCTGCTTTACGTCCTACGCTCTGGAAGCTTTTGCTTGGATATCTTCCGCCTGATCGTGCCCTTTGGTCCTCTGAATTAGCCAAGAAGAGGTCCCAGTACAAACATTTCAAAGACGACCTCCTCATGAATCCTTCAGAAATTATGAGGAGGATGTACTACTCCACTGCTCATGACATCGATGATGCAAAATCTGAGACTCGTTGCTTGCTTTCTAGATCACAAATCACTCATGGGGACCACCCTTTGAGTCTTGGCAAGACCAGCATATGGAATCAGTTCTTCCAGGACTCAGATATCATAGAACAGATTGACCGTGATGTAAAGCGTACTCATCCAGATATGCACTTCTTCTCTGGTGATTCTCAGTTTGCAAAATTGAATCAGGAGGCTTTAAAGaacctattaattatttttgcaaagTTGAACCCAGGTATAAGATATGTTCAAGGGATGAATGAGGTATTGGCTCCTCTCTTCCATGTGCTCAAAAATGACCCTGATGAGGAAAATGCAGCCTTTGCTGAAGCAgacacatttttttgttttgttgagcTATTGAGTgagttaaaagataatttttgtcaACAACTTGATAATAGTGTTGTTGGAATCCGTTCCACTATTACAAGATTGTCCCAGCTTTTAAAAGAACATGATGAAGAACTGTGGCGTCATCTTGAGGTCGCTACTAAGGTCAATCCCCAATTCTATGCATTTAGGTGGATTACTCTCCTCTTGACTCGGGAATTTAATTTTGCTGACATTCTTCATATTTGGGACACCCTTTTAAGTGATCCAGAGGGTCCACAGGTACAGTTTTGTTCCTATTTACCTTGTACTATATTTGGACTCCCCTAA 1212 0.4076 MMKKKKQVPEWLNSSMWSSPSDHRRFDPPEPPSPPPPPLPVSVREDPPTIPTNHNASPSSSPLSSASVSVFSSADDISRLGHAHGQAQAQLLAELSRKVIDMRELRRVASQGITDAAAPALRPTLWKLLLGYLPPDRALWSSELAKKRSQYKHFKDDLLMNPSEIMRRMYYSTAHDIDDAKSETRCLLSRSQITHGDHPLSLGKTSIWNQFFQDSDIIEQIDRDVKRTHPDMHFFSGDSQFAKLNQEALKNLLIIFAKLNPGIRYVQGMNEVLAPLFHVLKNDPDEENAAFAEADTFFCFVELLSELKDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVATKVNPQFYAFRWITLLLTREFNFADILHIWDTLLSDPEGPQVQFCSYLPCTIFGLP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1883 403 Gene3D - 320 400 - -
Ssu9g1883 403 MobiDBLite consensus disorder prediction 30 45 - -
Ssu9g1883 403 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 5 389 - -
Ssu9g1883 403 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 94 343 IPR035969 -
Ssu9g1883 403 MobiDBLite consensus disorder prediction 48 65 - -
Ssu9g1883 403 Pfam Rab-GTPase-TBC domain 213 387 IPR000195 -
Ssu9g1883 403 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 5 389 - -
Ssu9g1883 403 ProSiteProfiles TBC/rab GAP domain profile. 116 384 IPR000195 -
Ssu9g1883 403 MobiDBLite consensus disorder prediction 1 65 - -
Ssu9g1883 403 SMART tbc_4 113 403 IPR000195 -
Ssu9g1883 403 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 203 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1883 Ssu-Chr9 56372003 56374817 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1883 K24796 - gmx:100778830 597.045