Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1874 ATGGCTTCTTCTCCTCCAGACACGAGCAAGAGCATAAAGCTAGAGCGATACAACAGCTACATCCGGAGAGTGAACAGCACAAAGCTCCTAAACGCGTCCTCGAAGATCCTCTTCCGCGCCACTCTGCTAGTGGCACTCATCCTCGTATTCCTCTTCACCTTCAACTACCCTCCCCTCGGGGACACCAGCCACCGCCATGTCCACGCCCACTCCCACTTCCTCTCCTCCGCATTCGGCGCCTGGGAGAAGCAGGTCCGCCACTCCTCCACCCCGCGCCGCCCCAACGGCTTCTCCATCCTGGTGACCGGAGCCGCGGGCTTCGTCGGGACCCACTGCTCCCTCGCCCTCAAGAAGCGCGGCGACGGCGTCCTCGGCCTCGACAACTTCAACGCCTACTACGACCCCTCCCTCAAGCGCGCCCGCCAGGCAATGCTCGCCAAGCACCAAGTCTTCGTCGTCGAAGGCGACCTAAACGACACGCCGTTGCTCGAGAAGCTCTTCGACATCGTCGCCTTCACCCACATCCTCCACCTCGCGGCGCAGGCCGGGGTCCGCTACGCCATGCAGAACCCCCAGTCGTACGTCAGCGCCAACATTGCCGGCTTCGTCAACCTTCTGGAAGTGGCCAAGTCCGCGAACCCCCAGCCCGCAATCGTGTGGGCCTCTTCCAGTTCCGTCTACGGGCTCAACACCCAAAACCCGTTTTCCGAGCTCCACCGAACGGACCAGCCCGCCAGCCTCTACGCCGCCACGAAGAAAGCCGGGGAGGAAATCGCGCACACGTACAACCACATTTACGGGCTCTCCCTCACTGGGCTCCGCTTCTTCACGGTCTACGGCCCGTGGGGGAGGCCCGACATGGCCTACTTCTTCTTCACGAAGGACATCCTCCAGGGCAAGCCCATCCACGTGTACGAGGCGCAGGACGGGAAGCAGGTGGCGCGTGACTTCACCTACATCGACGACATCGTCAAAGGCTGCCTCGGGGCCCTCGACACCGCCGAGAAGAGCACCGGGAGCGGCGGCAAGAAGCGCGGCCCGGCCCAGTTGAGGGTTTACAATCTCGGGAACACGTCCCCCGTGCCCGTGGGGAACTTGGTCTCCATTCTCGAGGGTTTGCTCAACACGAAGGCAAAGAAGCACGTCATCAAGATGCCCTCAAACGGCGACGTTCCCTACACACACGCCAATGTGACTTTGGCTTACAGGGACTTCGCGTATAAACCCACCACCGATCTTGCCACCGGTCTCAGGAAGTTCGTCAAGTGGTACGTCGGTTATTACGGGGTCCAGACAAGGGTTAAAAAGGAAAAACGCCTTGACAATGAATGA 1332 0.6096 MASSPPDTSKSIKLERYNSYIRRVNSTKLLNASSKILFRATLLVALILVFLFTFNYPPLGDTSHRHVHAHSHFLSSAFGAWEKQVRHSSTPRRPNGFSILVTGAAGFVGTHCSLALKKRGDGVLGLDNFNAYYDPSLKRARQAMLAKHQVFVVEGDLNDTPLLEKLFDIVAFTHILHLAAQAGVRYAMQNPQSYVSANIAGFVNLLEVAKSANPQPAIVWASSSSVYGLNTQNPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILQGKPIHVYEAQDGKQVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGPAQLRVYNLGNTSPVPVGNLVSILEGLLNTKAKKHVIKMPSNGDVPYTHANVTLAYRDFAYKPTTDLATGLRKFVKWYVGYYGVQTRVKKEKRLDNE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1874 443 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 92 429 IPR036291 -
Ssu9g1874 443 Gene3D - 100 411 - -
Ssu9g1874 443 PANTHER EPIMERASE-RELATED 4 439 - -
Ssu9g1874 443 PRINTS Nucleotide sugar epimerase signature 390 407 - -
Ssu9g1874 443 PRINTS Nucleotide sugar epimerase signature 350 365 - -
Ssu9g1874 443 PRINTS Nucleotide sugar epimerase signature 125 141 - -
Ssu9g1874 443 PRINTS Nucleotide sugar epimerase signature 315 330 - -
Ssu9g1874 443 PANTHER UDP-GLUCURONATE 4-EPIMERASE 6 4 439 - -
Ssu9g1874 443 Pfam NAD dependent epimerase/dehydratase family 99 336 IPR001509 -
Ssu9g1874 443 Gene3D - 276 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1874 Ssu-Chr9 56216601 56217932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1874 3 437 Miscellaneous Gene Families AT3G23820 79.556 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1874 K08679 - gmx:100786653 817.764