Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1872 ATGAGTACGGTTGATAAAATGTTGATCAAGGGCATCCGGAGCTTCGACCCGGAGAACAAGAACGTCATCACCTTCTTCAGGCCCTTAACCCTAATCGTTGGCCCCAACGGTGCTGGCAAGACCACCATCATAGAGTGCCTGAAGCTTTCCTGCACCGGTGAGTTGCCTCCTAACGCCAGGTCTGGCCACAGCTTCATTCACGACCCCAAGGTTGCAGGGGAGACCGAAACGAAGGGACAGATTAAGCTCCGATTCAAGACGGCCGCCGGAAAAGACGTGGTCTGCGTGAGGTCGTTTCAGCTGACGCAAAAGGCCTCCAAGATGGAATACAAGGCAATCGAGAGTGTGCTTCAAACTATCAATCCTCATACAGGTGAGAAAGTTTGCCTCAGCTATAGATGCGCTGACATGGATCGAGAAATTCCTGCGCTCATGGGCGTTTCCAAGGCCATTCTCGAAAACGTGATCTTCGTTCATCAAGATGAGGCCAACTGGCCACTCCAGGATCCTTCCACCTTGAAGAAGAAGTTCGACGATATCTTTTCCGCAACTCGATACACCAAGGCACTGGAAGTTATAAAGAAGCTTCACAAGGAGCAGGCTCAAGAGATAAAGACTTACAAGCTCAAACTGGAAAATCTTCAAACTCTCAAAGATGCTGCTTATAAGcTTCGGGAAAGCATTGCACAGGATCAAGAGAAAACAGAGTCCATCAAATGTCAAGTACAACAGTTGGATGGGAGCATTAAAGAATTGGATGATAAAATTCATCACGCGGAGAAAACATTGAAAGATTTGCGGAAGCTGCAAGAGCAGATATCAACTAAAACTGCTGAACGAAGCACTCTGTTTAAGGAACAACAGAAACAATATGCAGCTCTTGCTGAGGAAAATGAAGACACTGATGAAGAGTTGATGGAATGGAAGACCAAGTTTGAAGAAAGAATTGctattttagaacaaaaaataagCAAGCTGGGAAGAGAGATGGCTGACACTGACATTAAAAGTTATGCCCTTAAGAAGACCGTTCATGATTCTGTCACTGAGATTATCAAGCTACAAACTGAAGCAGAAGCTCATTTGTCTTTGAAGAATGAACGTGATTCCTCCATTCACAATCTTTTTGCTAGATATAATTTAGGATCTCTTCCAAAGTCACCTTTCAGTGCTGAGGTTGCTTTAAACCTCACTAATCGTGTAAAATCGAGGTTGGCAGATCTTGTGAAGGATCTGGATGATAAAAAGAAAGCAAATGACAATGAACTCAAGATAGCATGGGATTGCTACATGAATGCAAATGACCGTTGGAAAGATACTGAGGCTGAAAAAAAGGCTAAGGCAAAGAGCAAGAGTGACATTTTGAAGCGCattgaagagaagaaaaatgagttTGATTCATTTGAACTTCAAATAACTAATGTAAACTTCTCTCAtatagatgaaagagaaagaaatttgAGAAATGAGGTTGAGAGGAAGGCAATCCAACTCGCTGAAAGACAATTTGAACCAAATATACGTCAAGTACAAAATGAGATATATAGTGTAGATCAAAAGATTAAGGCTATCAATCGAGAGAAGGATATCATGGCTTCTGATTCAGAGGACAGAGTTAAGCTATCTCTTAAGAAGGCAGAGTTGGAAAATCAGAAGAAGAAACATAAAAAGATAATTGATGACCAAAAGGACAACATAAGAAAGGTGCTGAAAGGGAGGGTTCCTCTTGATAAGGATGTGAAGAAGGAAATAACACAAGCATTAAGGGCTGTTGGAGCTGAATTTGACGATCTGAATGGAAAGTACCGTGAAGCTGAGAAGGAAGTCAACATGTTGCAGATGAAAATACAAGAAGTTAATAGTAACATATCCAAACACCACAAGGATTTGGAATCAAGAAAGAGATTTATTGAATCCAAGCTTCAGGCTTTGGATCAGCAATGTTCTGGAATTGATTCTTATCTCAAAGTTTTAGAGTCTGCCAAGGAGAAAAGAGATGTCCAGAGAAGCAAATATAATATTGCTGATGGTATGCGGCAAATGTTTGATCCTTTTGAAAGGGTTGCAAGAGCTCATCATGTTTGCCCTTGCTGTGAGCGCCCTTTCTCTTCAGAAGAAGAAGACGATTTTGTCAAGAAGCAAAGAGTGAAGGCTGCTAGTTCAGCCGAACATATGAAAGTTCTCGCTGTGGAGTCCTCAAACACAGAGTCTCATTATCAGCAGCTGGACAAGCTTCGTATGGTTTATGAAGATTATGTTAAACTTGGCAAGGAGACAATCCCTAATGCCAAAAATGAACTTCAGCAACTCGAAGAAGAGATGGATCACAAATCTCAGGCTCTTGACGatGTTTTAGGTGTTTTAGCACAAGTAAAGACTGACaaggatttggttgagacattgATGCAACCTGTTGAAAATGCTGACCGGCTTTTCCAAGAAATTCAAGCTTTGCAAAAGCAAGTTGAGGATTTAGAATATAAGCTTGATTTTCGAGGACAGGGAGTGAGGACTCTAGAAGAGATTCAATTGGAGCTTAACACATTGCAGAGCACAAAGGACAATTTGCAATCTGAATTGGAGAGGTTGAGGGATGACCAGAGGCATATGGAGAATGATctatcaaatattcaaatacgGTGGCACACTCTAAGGGAGGAGAAAGTGAAAGCAAATAACTTACTGGAACGTGTTAAACAATTAGAAGAAGAATTGGAACGTTTAACTGAAGAAAAGACTCAAGTTGATCTTGATGAGAAGCATTTGGCAGAAGCTCTTGGACCTTTATCCAAGGAGAGAGATAAATTACTTGCTGACCATGATGAACTGAAAATTAGACTCAACCGTGAGTATGAGGACCTGGCTGAACAAAAGAGAAGTTATCAGCAAGAAGCTGAAGCactatttaaaatgaattctaAGATCAAAGGGTATTCTGATTTAAAGAAAGGAGACAGGTTGAAGGAACTGCAGGAAAAGAAATCTCTATCAGAATCTCAACTTCAAAGCTGTGATACCAGGAAGCAGGAAATTTTAGCTGAACTCAACAAAAGTAAAGATTTGATGCGAGATCAAgatcaattaaaaagaaatattgaggACAACTTAAATTACAGGAAAACAAAGGCTGAAGTAGATGAGCTAGCACATGAAATTGACATGCTGgaagaaaatatattgaagGCTGGTGGGATTTCCACAATTGAAACTGAACTCCAGAAACTATCACAGGAGAGGGAGAGACTTCTTTCAGAGTTAAACAGGTGCCATGGAACAATGTCTGTTTACCAAagcaatatttcaaaaaataaggtTGATCTTAAGCAGGCTCAATACAAGGACATAGATAAGAGATACTTCGACCAGCTTATCCAGCTTAAGACAACTGAAATGGCCAACAAGGATCTGGATAGATACTACAATGCACTTGATAAAGCACTGATGCGCTTCCACACAATGAAAATGGaagaaatcaacaaaattataagGGAATTGTGGCAGCAAACTTATAGAGGACAAGATATAGACTACATTAGTATTCATTCCGACGCGGAAGGTGCAGGGACCCGTTCCTACAGTTACAAGGTTCTCATGCAGACTGGTGATGCAGAGTTGGAGATGAGAGGAAGATGTAGTGCAGGTCAGAAGGTTCTGGCGTCTCTTATCATACGGTTGGCTTTGGCTGAAACGTTTTGTCTCAATTGTGGAATACTTGCACTGGATGAACCTACGACAAATTTGGATGGACCAAATGCTGAAAGTCTGGCTGCAGCTCTCGTGAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATCACTCATGATGAGCGTTTTGCGCAACTGATTGGTCAGCGCCAGCATGCAGAGAGATATTATCGTGTCAGCAAAGATGACCTTCAGCACAGTATAATCGAGAGTCAGGAGATATTTGACTGA 3951 0.3966 MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIECLKLSCTGELPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCVRSFQLTQKASKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKEQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDQEKTESIKCQVQQLDGSIKELDDKIHHAEKTLKDLRKLQEQISTKTAERSTLFKEQQKQYAALAEENEDTDEELMEWKTKFEERIAILEQKISKLGREMADTDIKSYALKKTVHDSVTEIIKLQTEAEAHLSLKNERDSSIHNLFARYNLGSLPKSPFSAEVALNLTNRVKSRLADLVKDLDDKKKANDNELKIAWDCYMNANDRWKDTEAEKKAKAKSKSDILKRIEEKKNEFDSFELQITNVNFSHIDERERNLRNEVERKAIQLAERQFEPNIRQVQNEIYSVDQKIKAINREKDIMASDSEDRVKLSLKKAELENQKKKHKKIIDDQKDNIRKVLKGRVPLDKDVKKEITQALRAVGAEFDDLNGKYREAEKEVNMLQMKIQEVNSNISKHHKDLESRKRFIESKLQALDQQCSGIDSYLKVLESAKEKRDVQRSKYNIADGMRQMFDPFERVARAHHVCPCCERPFSSEEEDDFVKKQRVKAASSAEHMKVLAVESSNTESHYQQLDKLRMVYEDYVKLGKETIPNAKNELQQLEEEMDHKSQALDDVLGVLAQVKTDKDLVETLMQPVENADRLFQEIQALQKQVEDLEYKLDFRGQGVRTLEEIQLELNTLQSTKDNLQSELERLRDDQRHMENDLSNIQIRWHTLREEKVKANNLLERVKQLEEELERLTEEKTQVDLDEKHLAEALGPLSKERDKLLADHDELKIRLNREYEDLAEQKRSYQQEAEALFKMNSKIKGYSDLKKGDRLKELQEKKSLSESQLQSCDTRKQEILAELNKSKDLMRDQDQLKRNIEDNLNYRKTKAEVDELAHEIDMLEENILKAGGISTIETELQKLSQERERLLSELNRCHGTMSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDAEGAGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALVRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVSKDDLQHSIIESQEIFD 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1872 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 1286 IPR027417 -
Ssu9g1872 1316 Coils Coil 884 918 - -
Ssu9g1872 1316 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Ssu9g1872 1316 ProSiteProfiles Rad50 zinc-hook domain profile. 648 747 IPR013134 -
Ssu9g1872 1316 Coils Coil 987 1007 - -
Ssu9g1872 1316 Coils Coil 937 971 - -
Ssu9g1872 1316 Gene3D - 1042 1310 IPR027417 -
Ssu9g1872 1316 Gene3D - 4 390 IPR027417 -
Ssu9g1872 1316 Coils Coil 1038 1058 - -
Ssu9g1872 1316 Coils Coil 284 329 - -
Ssu9g1872 1316 PANTHER RAD50 1 1314 - -
Ssu9g1872 1316 Coils Coil 839 880 - -
Ssu9g1872 1316 TIGRFAM rad50: rad50 3 1309 IPR004584 GO:0000723|GO:0005634|GO:0006281|GO:0016887|GO:0030870
Ssu9g1872 1316 Coils Coil 808 828 - -
Ssu9g1872 1316 Coils Coil 1065 1092 - -
Ssu9g1872 1316 Coils Coil 242 279 - -
Ssu9g1872 1316 Coils Coil 753 787 - -
Ssu9g1872 1316 CDD ABC_Rad50 4 170 IPR045171 -
Ssu9g1872 1316 Coils Coil 588 622 - -
Ssu9g1872 1316 Pfam AAA domain 7 232 IPR038729 GO:0140664
Ssu9g1872 1316 Coils Coil 538 565 - -
Ssu9g1872 1316 Coils Coil 627 647 - -
Ssu9g1872 1316 Coils Coil 197 217 - -
Ssu9g1872 1316 CDD ABC_Rad50 1205 1308 IPR045171 -
Ssu9g1872 1316 Coils Coil 507 527 - -
Ssu9g1872 1316 Pfam Rad50 zinc hook motif 688 724 IPR013134 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1872 K10866 - gmx:100818545 2214.5