Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1867 ATGAAAGGCCTACTTGTTGTCCTTCTAATCTTTGTTATTGCTTCACCTAGCTTGTGTGCTAGAGTAAGGCTTGAGGGAAGTCCTAACTTCACTGTTGATAGCTACGGTGCAACTGGGGATGGCCAAACTGATGATTCACAGGCTTTTGTGAAGGCATGGCAAGACGTGTGTGGTGCAAGTCAGGACACCGCAACACTTCTCATACCGAAAAAGAACTACATGTTGCAACCTGTGTCGTTTCAGGGTCCTTGCAAACCTTCAACCGTTAACATTGAGCTTCAGGGGACTATCATTGCCCCCAAAAGCGCTAAGGATTGGCAATGGCGAAATGGCTCTAAGAGATCATGGGTCCTATTCTCGAGCATAAATGGTCTTGTAATTAATGGAGGAGGACAAGTTGATGGCCAAGGTGCTGCATGGTGGAATCACCACGACTCTAACAATAACAGGCCCACTGCTCTTCGATTCCAAAGCTGTAACAATCTACGTCTTAGCTCGTTGACTCACATCAACAGCCCGAGAAATCATATAAGCATAACTAAATGCACTGCCTCAGAAATCTCCAATCTTCAAATTACTGCACCAAACGATAGTCCAAACACCGACGGGATAGATATCGCAGGATCATCCAACATCTTGATACGGGATTCCGTCATTAAAACTGgTGACGACTGCATTGCCATTAACACCGATACTTCCTTCGTCAACATAAGTGGTATTTTATGTGGACCTGGCCACGGCATCAGTGTTGGGAGCCTCGGACAAAATGGAGAATATGCTAAAGTTGAAGAGATAAATGTGCGGAATTGCACCTTCGATGGAACTACCAATGGGGCCAGAATCAAGACATGGAAGggAGGAGCCGGTTATGCTAGGAAGATAACATTTGAAGATATTGTAGTTGTTGGAGCCAAGTCCCCTTTGGTTATTAACCAACAATATTCTGACCTAGACAAAAGTGGAGGACAAGCAGTGAAAATAAGTGATGTTACTTTCCGCAACGTGAGGGGAACCGCTAGTACTGAGGAAGCAGTCGTACTGAATTGCGACCGCACAGTAGGCTGCACCAACATTGTATTGGAAAATATTTCCATAACCACTCCAGGTGGAAGTAAAGCAACAGTAACATGCACAAATATACAAGGGACCTGCACATCGTGTGATCCAATTGTTCCATGTCTTCCAAACCATTGA 1194 0.4464 MKGLLVVLLIFVIASPSLCARVRLEGSPNFTVDSYGATGDGQTDDSQAFVKAWQDVCGASQDTATLLIPKKNYMLQPVSFQGPCKPSTVNIELQGTIIAPKSAKDWQWRNGSKRSWVLFSSINGLVINGGGQVDGQGAAWWNHHDSNNNRPTALRFQSCNNLRLSSLTHINSPRNHISITKCTASEISNLQITAPNDSPNTDGIDIAGSSNILIRDSVIKTGDDCIAINTDTSFVNISGILCGPGHGISVGSLGQNGEYAKVEEINVRNCTFDGTTNGARIKTWKGGAGYARKITFEDIVVVGAKSPLVINQQYSDLDKSGGQAVKISDVTFRNVRGTASTEEAVVLNCDRTVGCTNIVLENISITTPGGSKATVTCTNIQGTCTSCDPIVPCLPNH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1867 397 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Ssu9g1867 397 PANTHER - 17 394 - -
Ssu9g1867 397 Pfam Glycosyl hydrolases family 28 62 384 IPR000743 GO:0004650|GO:0005975
Ssu9g1867 397 PANTHER - 17 394 - -
Ssu9g1867 397 Gene3D - 21 390 IPR012334 -
Ssu9g1867 397 SUPERFAMILY Pectin lyase-like 26 394 IPR011050 -
Ssu9g1867 397 SMART pbh1 291 312 IPR006626 -
Ssu9g1867 397 SMART pbh1 355 379 IPR006626 -
Ssu9g1867 397 SMART pbh1 262 283 IPR006626 -
Ssu9g1867 397 SMART pbh1 322 349 IPR006626 -
Ssu9g1867 397 SMART pbh1 182 208 IPR006626 -
Ssu9g1867 397 SMART pbh1 209 230 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1867 Ssu-Chr9 56132330 56134968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu9g1867 1 383 Glycoside Hydrolase AT5G17200 43.165 1.68e-123 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu9g1867 K01184 - jre:108997191 417.542